Variant report

Variant	rs55857580
Chromosome Location	chr16:82352804-82352805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82351642..82353546-chr16:82359151..82361284,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs55675815	1.00[AMR][1000 genomes]
rs56019989	0.93[AFR][1000 genomes]
rs56218240	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56302622	0.93[AFR][1000 genomes]
rs56933388	0.93[AFR][1000 genomes]
rs57183989	1.00[AMR][1000 genomes]
rs57760626	1.00[AMR][1000 genomes]
rs58911741	0.89[AFR][1000 genomes]
rs58954718	0.89[AFR][1000 genomes]
rs59522159	1.00[AMR][1000 genomes]
rs61556092	1.00[AMR][1000 genomes]
rs74030307	1.00[AMR][1000 genomes]
rs74032615	1.00[AMR][1000 genomes]
rs74032632	0.89[AFR][1000 genomes]
rs74032634	1.00[AMR][1000 genomes]
rs74032642	1.00[AMR][1000 genomes]
rs74032643	1.00[AMR][1000 genomes]
rs74032645	1.00[AMR][1000 genomes]
rs74032646	1.00[AMR][1000 genomes]
rs74032648	1.00[AMR][1000 genomes]
rs74032658	1.00[AMR][1000 genomes]
rs74032662	0.96[AFR][1000 genomes]
rs74032666	1.00[AFR][1000 genomes]
rs74032667	0.87[AFR][1000 genomes]
rs74033606	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74033610	0.93[AFR][1000 genomes]
rs74033611	0.93[AFR][1000 genomes]
rs74033613	0.93[AFR][1000 genomes]
rs74033614	0.93[AFR][1000 genomes]
rs74033616	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74033617	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv833302	chr16:82188351-82363863	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1844598	chr16:82195234-82429790	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv1847414	chr16:82195234-82429790	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv833304	chr16:82306875-82429021	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv525789	chr16:82349244-82402803	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82351800-82353000	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links