Variant report

Variant	rs58954718
Chromosome Location	chr16:82334459-82334460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs55694217	1.00[AMR][1000 genomes]
rs55709211	1.00[AMR][1000 genomes]
rs55857580	0.89[AFR][1000 genomes]
rs55891329	1.00[AMR][1000 genomes]
rs56019989	0.82[AFR][1000 genomes]
rs56218240	0.82[AFR][1000 genomes]
rs56302622	0.82[AFR][1000 genomes]
rs56933388	0.82[AFR][1000 genomes]
rs58911741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59095619	1.00[AMR][1000 genomes]
rs74029931	1.00[AMR][1000 genomes]
rs74030310	1.00[AMR][1000 genomes]
rs74030359	1.00[AMR][1000 genomes]
rs74030387	1.00[AMR][1000 genomes]
rs74030388	1.00[AMR][1000 genomes]
rs74030389	1.00[AMR][1000 genomes]
rs74030394	1.00[AMR][1000 genomes]
rs74030761	1.00[AMR][1000 genomes]
rs74032613	1.00[AMR][1000 genomes]
rs74032616	1.00[AMR][1000 genomes]
rs74032617	1.00[AMR][1000 genomes]
rs74032632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74032662	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74032666	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74032702	1.00[AMR][1000 genomes]
rs74033605	1.00[AMR][1000 genomes]
rs74033606	0.82[AFR][1000 genomes]
rs74033610	0.82[AFR][1000 genomes]
rs74033611	0.82[AFR][1000 genomes]
rs74033613	0.82[AFR][1000 genomes]
rs74033614	0.82[AFR][1000 genomes]
rs74033616	0.82[AFR][1000 genomes]
rs74033617	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv833302	chr16:82188351-82363863	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1844598	chr16:82195234-82429790	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv1847414	chr16:82195234-82429790	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv907018	chr16:82306551-82345583	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv833304	chr16:82306875-82429021	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3389184	chr16:82332301-82334974	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3321703	chr16:82332401-82334699	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82329400-82335800	Weak transcription	Brain Anterior Caudate	brain
2	chr16:82334200-82335400	Enhancers	Left Ventricle	heart
3	chr16:82334200-82337000	Enhancers	Fetal Brain Male	brain
4	chr16:82334400-82335600	Enhancers	Fetal Brain Female	brain
5	chr16:82334400-82336600	Enhancers	Lung	lung
6	chr16:82334400-82336800	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links