Variant report

Variant	rs56302622
Chromosome Location	chr16:82365061-82365062
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55857580	0.93[AFR][1000 genomes]
rs56019989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56218240	1.00[AFR][1000 genomes]
rs56933388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58911741	0.82[AFR][1000 genomes]
rs58954718	0.82[AFR][1000 genomes]
rs74032632	0.82[AFR][1000 genomes]
rs74032662	0.89[AFR][1000 genomes]
rs74032666	0.93[AFR][1000 genomes]
rs74032667	0.81[AFR][1000 genomes]
rs74033606	1.00[AFR][1000 genomes]
rs74033610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74033611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74033613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74033614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74033616	1.00[AFR][1000 genomes]
rs74033617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	esv1844598	chr16:82195234-82429790	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv1847414	chr16:82195234-82429790	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
7	nsv833304	chr16:82306875-82429021	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv525789	chr16:82349244-82402803	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
10	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82362600-82366200	Enhancers	Stomach Mucosa	stomach
2	chr16:82363800-82365600	Weak transcription	Pancreas	Pancrea
3	chr16:82364200-82365800	Weak transcription	Liver	Liver
4	chr16:82364400-82366600	Weak transcription	Fetal Heart	heart
5	chr16:82364800-82366400	Enhancers	Gastric	stomach
6	chr16:82365000-82365200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr16:82365000-82365200	Enhancers	Fetal Brain Female	brain
8	chr16:82365000-82365400	Bivalent Enhancer	HepG2	liver
9	chr16:82365000-82365600	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr16:82365000-82366000	Enhancers	Fetal Lung	lung
11	chr16:82365000-82366400	Enhancers	Lung	lung
12	chr16:82365000-82367200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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