Variant report

Variant	rs74033614
Chromosome Location	chr16:82363685-82363686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:82342573..82345161-chr16:82362361..82364384,2	MCF-7	breast:
2	chr16:82358580..82360925-chr16:82361830..82364617,5	MCF-7	breast:
3	chr16:82297678..82300099-chr16:82362624..82364703,2	MCF-7	breast:
4	chr16:82362203..82364842-chr16:82370219..82372533,4	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55857580	0.93[AFR][1000 genomes]
rs56019989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56218240	1.00[AFR][1000 genomes]
rs56302622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56933388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58911741	0.82[AFR][1000 genomes]
rs58954718	0.82[AFR][1000 genomes]
rs74032632	0.82[AFR][1000 genomes]
rs74032662	0.89[AFR][1000 genomes]
rs74032666	0.93[AFR][1000 genomes]
rs74032667	0.81[AFR][1000 genomes]
rs74033606	1.00[AFR][1000 genomes]
rs74033610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74033611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74033613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74033616	1.00[AFR][1000 genomes]
rs74033617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv833302	chr16:82188351-82363863	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1844598	chr16:82195234-82429790	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv1847414	chr16:82195234-82429790	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv833304	chr16:82306875-82429021	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv525789	chr16:82349244-82402803	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82361800-82364000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr16:82362400-82363800	Enhancers	Pancreas	Pancrea
3	chr16:82362600-82364200	Enhancers	Liver	Liver
4	chr16:82362600-82365000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr16:82362600-82365000	Enhancers	HepG2	liver
6	chr16:82362600-82366200	Enhancers	Stomach Mucosa	stomach
7	chr16:82362800-82363800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr16:82362800-82363800	Enhancers	Psoas Muscle	Psoas
9	chr16:82362800-82364200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr16:82362800-82364400	Enhancers	Brain Hippocampus Middle	brain
11	chr16:82362800-82364400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr16:82363000-82364400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr16:82363200-82364000	Enhancers	Brain Germinal Matrix	brain
14	chr16:82363200-82364200	Enhancers	Brain Substantia Nigra	brain
15	chr16:82363400-82363800	Enhancers	Esophagus	oesophagus
16	chr16:82363600-82363800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr16:82363600-82363800	Enhancers	Brain Cingulate Gyrus	brain
18	chr16:82363600-82363800	Enhancers	Fetal Brain Female	brain
19	chr16:82363600-82364200	Enhancers	Brain Anterior Caudate	brain
20	chr16:82363600-82364200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr16:82363600-82364800	Weak transcription	Gastric	stomach
22	chr16:82363600-82365000	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links