Variant report

Variant	rs74032666
Chromosome Location	chr16:82351521-82351522
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs55694217	1.00[AMR][1000 genomes]
rs55709211	1.00[AMR][1000 genomes]
rs55857580	1.00[AFR][1000 genomes]
rs55891329	1.00[AMR][1000 genomes]
rs56019989	0.93[AFR][1000 genomes]
rs56218240	0.93[AFR][1000 genomes]
rs56302622	0.93[AFR][1000 genomes]
rs56933388	0.93[AFR][1000 genomes]
rs58911741	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58954718	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59095619	1.00[AMR][1000 genomes]
rs74029931	1.00[AMR][1000 genomes]
rs74030310	1.00[AMR][1000 genomes]
rs74030359	1.00[AMR][1000 genomes]
rs74030387	1.00[AMR][1000 genomes]
rs74030388	1.00[AMR][1000 genomes]
rs74030389	1.00[AMR][1000 genomes]
rs74030394	1.00[AMR][1000 genomes]
rs74030761	1.00[AMR][1000 genomes]
rs74030777	1.00[AMR][1000 genomes]
rs74030787	1.00[AMR][1000 genomes]
rs74030788	1.00[AMR][1000 genomes]
rs74030789	1.00[AMR][1000 genomes]
rs74032613	1.00[AMR][1000 genomes]
rs74032616	1.00[AMR][1000 genomes]
rs74032617	1.00[AMR][1000 genomes]
rs74032632	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74032662	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74032667	0.87[AFR][1000 genomes]
rs74032702	1.00[AMR][1000 genomes]
rs74033605	1.00[AMR][1000 genomes]
rs74033606	0.93[AFR][1000 genomes]
rs74033610	0.93[AFR][1000 genomes]
rs74033611	0.93[AFR][1000 genomes]
rs74033613	0.93[AFR][1000 genomes]
rs74033614	0.93[AFR][1000 genomes]
rs74033616	0.93[AFR][1000 genomes]
rs74033617	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv833302	chr16:82188351-82363863	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1844598	chr16:82195234-82429790	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv1847414	chr16:82195234-82429790	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv833304	chr16:82306875-82429021	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv525789	chr16:82349244-82402803	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82347800-82351800	Weak transcription	Psoas Muscle	Psoas
2	chr16:82349200-82352000	Enhancers	Stomach Mucosa	stomach
3	chr16:82349400-82351800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr16:82350000-82351600	Enhancers	Lung	lung
5	chr16:82350600-82352200	Enhancers	Aorta	Aorta
6	chr16:82350600-82352200	Enhancers	Gastric	stomach
7	chr16:82351000-82351600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr16:82351000-82351800	Enhancers	Brain Hippocampus Middle	brain
9	chr16:82351200-82351600	Enhancers	Brain Substantia Nigra	brain
10	chr16:82351200-82351600	Enhancers	Pancreas	Pancrea
11	chr16:82351200-82352200	Enhancers	Left Ventricle	heart
12	chr16:82351200-82352400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr16:82351400-82351600	Bivalent Enhancer	Liver	Liver
14	chr16:82351400-82351600	Enhancers	Right Ventricle	heart
15	chr16:82351400-82351800	Enhancers	Fetal Lung	lung
16	chr16:82351400-82351800	Enhancers	Stomach Smooth Muscle	stomach
17	chr16:82351400-82352000	Enhancers	Brain Cingulate Gyrus	brain
18	chr16:82351400-82352000	Enhancers	Placenta	Placenta
19	chr16:82351400-82352000	Enhancers	Right Atrium	heart

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