Variant report

Variant	rs55884881
Chromosome Location	chr7:119261482-119261483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12534787	1.00[AMR][1000 genomes]
rs12536031	1.00[AMR][1000 genomes]
rs12537415	1.00[AMR][1000 genomes]
rs12539502	1.00[AMR][1000 genomes]
rs12539686	1.00[AMR][1000 genomes]
rs13222843	1.00[AMR][1000 genomes]
rs17142318	1.00[AMR][1000 genomes]
rs1880280	0.83[AMR][1000 genomes]
rs1916860	1.00[AMR][1000 genomes]
rs56117135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56190766	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56280460	1.00[AMR][1000 genomes]
rs56313518	1.00[AMR][1000 genomes]
rs57901461	1.00[AMR][1000 genomes]
rs58034992	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58446133	1.00[AMR][1000 genomes]
rs58894214	1.00[AMR][1000 genomes]
rs61147847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719970	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719971	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719973	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720531	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73720538	1.00[AMR][1000 genomes]
rs73720542	1.00[AMR][1000 genomes]
rs73720543	1.00[AMR][1000 genomes]
rs73720545	1.00[AMR][1000 genomes]
rs73720549	1.00[AMR][1000 genomes]
rs73720550	1.00[AMR][1000 genomes]
rs73720551	1.00[AMR][1000 genomes]
rs73720703	1.00[AMR][1000 genomes]
rs73720708	1.00[AMR][1000 genomes]
rs73720714	1.00[AMR][1000 genomes]
rs73720715	1.00[AMR][1000 genomes]
rs73720716	1.00[AMR][1000 genomes]
rs73720719	1.00[AMR][1000 genomes]
rs73722406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722414	1.00[AMR][1000 genomes]
rs73722418	1.00[AMR][1000 genomes]
rs73722424	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722425	1.00[AMR][1000 genomes]
rs73722662	1.00[AMR][1000 genomes]
rs73722665	1.00[AMR][1000 genomes]
rs73722667	1.00[AMR][1000 genomes]
rs7789253	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949327	chr7:119179990-119402882	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv889114	chr7:119206096-119440159	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1020551	chr7:119232910-119292763	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119259800-119262000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:119260800-119261800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:119261000-119261600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:119261000-119261600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:119261000-119261600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:119261400-119261600	Enhancers	HUES48 Cell Line	embryonic stem cell

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