Variant report

Variant	rs73720549
Chromosome Location	chr7:119402204-119402205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12534787	1.00[AMR][1000 genomes]
rs12536031	1.00[AMR][1000 genomes]
rs12537415	1.00[AMR][1000 genomes]
rs12539502	1.00[AMR][1000 genomes]
rs12539686	1.00[AMR][1000 genomes]
rs13222843	1.00[AMR][1000 genomes]
rs17142318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17142373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17142381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1880280	0.83[AMR][1000 genomes]
rs1916860	1.00[AMR][1000 genomes]
rs55884881	1.00[AMR][1000 genomes]
rs56117135	1.00[AMR][1000 genomes]
rs56190766	1.00[AMR][1000 genomes]
rs56280460	1.00[AMR][1000 genomes]
rs56313518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57901461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58034992	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58446133	1.00[AMR][1000 genomes]
rs58894214	1.00[AMR][1000 genomes]
rs61147847	1.00[AMR][1000 genomes]
rs61208465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719970	1.00[AMR][1000 genomes]
rs73719971	1.00[AMR][1000 genomes]
rs73719973	1.00[AMR][1000 genomes]
rs73720100	1.00[AMR][1000 genomes]
rs73720531	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73720538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720543	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720545	1.00[AMR][1000 genomes]
rs73720550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720708	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720719	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722406	1.00[AMR][1000 genomes]
rs73722414	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722418	1.00[AMR][1000 genomes]
rs73722424	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722425	1.00[AMR][1000 genomes]
rs73722662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722665	1.00[AMR][1000 genomes]
rs73722667	1.00[AMR][1000 genomes]
rs7789253	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949327	chr7:119179990-119402882	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv889114	chr7:119206096-119440159	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv889115	chr7:119270386-119577292	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1029023	chr7:119292763-119606632	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1023813	chr7:119292763-119606803	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv524225	chr7:119293417-119606632	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1029841	chr7:119299627-119606632	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1024175	chr7:119299627-119606803	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1018500	chr7:119310497-119532489	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1028812	chr7:119310497-119604904	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv539097	chr7:119310497-119604904	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1033418	chr7:119324894-119600025	Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv539098	chr7:119324894-119600025	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv608322	chr7:119363703-119467040	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv608323	chr7:119363703-119469204	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv1024697	chr7:119377777-119426170	Enhancers Weak transcription Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119364800-119416000	Weak transcription	K562	blood
2	chr7:119401600-119402600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:119401800-119402600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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