Variant report

Variant	rs58446133
Chromosome Location	chr7:119214161-119214162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:119211056..119214261-chr7:119214480..119218185,4	K562	blood:
2	chr7:119212184..119216632-chr7:119220970..119225768,5	K562	blood:
3	chr7:119212184..119214604-chr7:119220970..119224685,3	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12534787	1.00[AMR][1000 genomes]
rs12536031	1.00[AMR][1000 genomes]
rs12539502	1.00[AMR][1000 genomes]
rs12539686	1.00[AMR][1000 genomes]
rs17142318	1.00[AMR][1000 genomes]
rs1916860	1.00[AMR][1000 genomes]
rs55884881	1.00[AMR][1000 genomes]
rs56117135	1.00[AMR][1000 genomes]
rs56190766	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56280460	1.00[AMR][1000 genomes]
rs56313518	1.00[AMR][1000 genomes]
rs58034992	1.00[AMR][1000 genomes]
rs58894214	1.00[AMR][1000 genomes]
rs61147847	1.00[AMR][1000 genomes]
rs73719970	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719971	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719973	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720100	1.00[AMR][1000 genomes]
rs73720531	0.83[AMR][1000 genomes]
rs73720538	1.00[AMR][1000 genomes]
rs73720542	1.00[AMR][1000 genomes]
rs73720543	1.00[AMR][1000 genomes]
rs73720545	1.00[AMR][1000 genomes]
rs73720549	1.00[AMR][1000 genomes]
rs73720550	1.00[AMR][1000 genomes]
rs73720551	1.00[AMR][1000 genomes]
rs73722406	1.00[AMR][1000 genomes]
rs73722414	1.00[AMR][1000 genomes]
rs73722418	1.00[AMR][1000 genomes]
rs73722424	1.00[AMR][1000 genomes]
rs73722425	1.00[AMR][1000 genomes]
rs73722662	1.00[AMR][1000 genomes]
rs73722665	1.00[AMR][1000 genomes]
rs73722667	1.00[AMR][1000 genomes]
rs7789253	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889100	chr7:118744450-119247571	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1019377	chr7:119164442-119233633	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1019921	chr7:119166254-119233633	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv949327	chr7:119179990-119402882	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3345886	chr7:119204050-119225361	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv889114	chr7:119206096-119440159	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119213000-119218200	Weak transcription	Brain Substantia Nigra	brain

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