Variant report

Variant	rs12539686
Chromosome Location	chr7:119315949-119315950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119308246..119310474-chr7:119311862..119317073,5	K562	blood:
2	chr7:119308246..119311748-chr7:119315573..119317458,3	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11975469	1.00[MEX][hapmap]
rs12534787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12536031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12537415	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12539502	1.00[ASW][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13222843	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17142318	1.00[AMR][1000 genomes]
rs17142373	1.00[AMR][1000 genomes]
rs17142381	1.00[AMR][1000 genomes]
rs1880280	0.83[AMR][1000 genomes]
rs1916860	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55884881	1.00[AMR][1000 genomes]
rs56117135	1.00[AMR][1000 genomes]
rs56190766	1.00[AMR][1000 genomes]
rs56280460	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56313518	1.00[AMR][1000 genomes]
rs57901461	1.00[AMR][1000 genomes]
rs58034992	1.00[AMR][1000 genomes]
rs58446133	1.00[AMR][1000 genomes]
rs58894214	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61147847	1.00[AMR][1000 genomes]
rs61208465	1.00[AMR][1000 genomes]
rs73719970	1.00[AMR][1000 genomes]
rs73719971	1.00[AMR][1000 genomes]
rs73719973	1.00[AMR][1000 genomes]
rs73720100	1.00[AMR][1000 genomes]
rs73720531	0.83[AMR][1000 genomes]
rs73720538	1.00[AMR][1000 genomes]
rs73720542	1.00[AMR][1000 genomes]
rs73720543	1.00[AMR][1000 genomes]
rs73720545	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720549	1.00[AMR][1000 genomes]
rs73720550	1.00[AMR][1000 genomes]
rs73720551	1.00[AMR][1000 genomes]
rs73720703	1.00[AMR][1000 genomes]
rs73720708	1.00[AMR][1000 genomes]
rs73720714	1.00[AMR][1000 genomes]
rs73720715	1.00[AMR][1000 genomes]
rs73720716	1.00[AMR][1000 genomes]
rs73720719	1.00[AMR][1000 genomes]
rs73722406	1.00[AMR][1000 genomes]
rs73722414	1.00[AMR][1000 genomes]
rs73722418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722424	1.00[AMR][1000 genomes]
rs73722425	1.00[AMR][1000 genomes]
rs73722662	1.00[AMR][1000 genomes]
rs73722665	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73722667	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7789253	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949327	chr7:119179990-119402882	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv889114	chr7:119206096-119440159	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv889115	chr7:119270386-119577292	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1029023	chr7:119292763-119606632	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1023813	chr7:119292763-119606803	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv524225	chr7:119293417-119606632	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1029841	chr7:119299627-119606632	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1024175	chr7:119299627-119606803	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1018500	chr7:119310497-119532489	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1028812	chr7:119310497-119604904	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv539097	chr7:119310497-119604904	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119311000-119326000	Weak transcription	K562	blood

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