Variant report

Variant	rs55901574
Chromosome Location	chr7:103850218-103850219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:103847130-103850285	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ORC5	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10155973	0.94[EUR][1000 genomes]
rs10230637	0.92[EUR][1000 genomes]
rs10232393	0.94[EUR][1000 genomes]
rs10245622	0.94[EUR][1000 genomes]
rs10248278	0.92[EUR][1000 genomes]
rs10250051	0.94[EUR][1000 genomes]
rs10251976	0.92[EUR][1000 genomes]
rs10260238	0.92[EUR][1000 genomes]
rs10275705	0.94[EUR][1000 genomes]
rs10277637	0.92[EUR][1000 genomes]
rs10279675	0.94[EUR][1000 genomes]
rs10279892	0.94[EUR][1000 genomes]
rs10281636	0.92[EUR][1000 genomes]
rs16873424	0.92[EUR][1000 genomes]
rs2188287	0.92[AMR][1000 genomes]
rs55749110	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56048667	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56390129	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57278162	0.94[EUR][1000 genomes]
rs59290626	0.94[EUR][1000 genomes]
rs6949887	0.92[EUR][1000 genomes]
rs6971709	0.94[EUR][1000 genomes]
rs73415708	0.92[EUR][1000 genomes]
rs73415709	0.92[EUR][1000 genomes]
rs73415735	0.94[EUR][1000 genomes]
rs73415737	0.94[EUR][1000 genomes]
rs9656093	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019640	chr7:103813522-103884705	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
2	nsv1026481	chr7:103813522-103890770	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	esv2762692	chr7:103813522-103890782	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
4	nsv526062	chr7:103817597-103891085	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	nsv608065	chr7:103817597-103990755	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103849200-103850800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:103849600-103850400	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr7:103850200-103850600	Active TSS	H9 Cell Line	embryonic stem cell
4	chr7:103850200-103850800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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