Variant report

Variant	rs55958773
Chromosome Location	chr3:155152128-155152129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr3:155152123-155152365	SH-SY5Y	brain:	n/a	n/a
2	POLR2A	chr3:155152121-155152179	A549	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000242152	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10513477	0.95[EUR][1000 genomes]
rs11915298	0.95[EUR][1000 genomes]
rs11922945	0.95[EUR][1000 genomes]
rs34132051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56328238	0.90[EUR][1000 genomes]
rs58539739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59992845	0.95[EUR][1000 genomes]
rs60135229	0.95[EUR][1000 genomes]
rs60670071	0.95[EUR][1000 genomes]
rs60945017	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61572323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73009750	0.83[AMR][1000 genomes]
rs73009752	0.83[AMR][1000 genomes]
rs73009769	0.83[AMR][1000 genomes]
rs73011584	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73011588	0.95[EUR][1000 genomes]
rs73011589	0.95[EUR][1000 genomes]
rs73011590	0.95[EUR][1000 genomes]
rs73874804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874808	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874820	0.83[EUR][1000 genomes]
rs73874824	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874835	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv877679	chr3:155128968-155204939	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155151600-155152600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:155151600-155152600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:155152000-155152600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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