Variant report

Variant	rs56328238
Chromosome Location	chr3:155237984-155237985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155233725..155236856-chr3:155237898..155240104,3	K562	blood:
2	chr3:155235777..155238536-chr3:155239012..155241056,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10513477	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11915298	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11922945	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11925864	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34132051	0.90[EUR][1000 genomes]
rs55958773	0.90[EUR][1000 genomes]
rs58539739	0.90[EUR][1000 genomes]
rs59992845	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60135229	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60670071	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60945017	0.95[EUR][1000 genomes]
rs61572323	0.90[EUR][1000 genomes]
rs73011584	0.90[EUR][1000 genomes]
rs73011588	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73011589	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73011590	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73874804	0.90[EUR][1000 genomes]
rs73874805	0.90[EUR][1000 genomes]
rs73874807	0.90[EUR][1000 genomes]
rs73874808	0.90[EUR][1000 genomes]
rs73874814	0.90[EUR][1000 genomes]
rs73874815	0.90[EUR][1000 genomes]
rs73874816	0.90[EUR][1000 genomes]
rs73874824	0.95[EUR][1000 genomes]
rs73874835	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155200800-155251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:155230400-155241000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:155230600-155241000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:155230600-155241200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:155230600-155242800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:155230600-155243800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:155230600-155249000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:155230600-155271400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:155230800-155238000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:155230800-155241200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:155230800-155244400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:155230800-155248400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:155231200-155253000	Weak transcription	A549	lung
14	chr3:155232200-155239200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:155232200-155241000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:155232200-155241200	Weak transcription	Esophagus	oesophagus
17	chr3:155232200-155253000	Weak transcription	Fetal Intestine Large	intestine
18	chr3:155232200-155258800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:155232200-155274000	Weak transcription	Pancreas	Pancrea
20	chr3:155232400-155241200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr3:155232400-155244000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:155232400-155247000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr3:155232400-155250400	Weak transcription	Gastric	stomach
24	chr3:155235000-155239400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:155235400-155249000	Weak transcription	Fetal Intestine Small	intestine
26	chr3:155235600-155238600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:155235800-155238000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:155236200-155238200	Enhancers	Primary B cells from cord blood	blood
29	chr3:155236200-155238200	Enhancers	Fetal Thymus	thymus
30	chr3:155236200-155238800	Enhancers	Thymus	Thymus
31	chr3:155236200-155241200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr3:155236200-155249400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:155236400-155239400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr3:155236400-155241200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:155236800-155238000	Genic enhancers	Dnd41	blood
36	chr3:155237000-155248800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr3:155237600-155238000	Weak transcription	Brain Germinal Matrix	brain
38	chr3:155237800-155238400	Weak transcription	Fetal Kidney	kidney

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