Variant report

Variant	rs73874807
Chromosome Location	chr3:155181697-155181698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10513477	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915298	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922945	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825234	1.00[ASN][1000 genomes]
rs34132051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55958773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56328238	0.90[EUR][1000 genomes]
rs58162674	1.00[ASN][1000 genomes]
rs58539739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59529957	1.00[ASN][1000 genomes]
rs59992845	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60135229	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60472887	1.00[ASN][1000 genomes]
rs60670071	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60945017	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61042393	1.00[ASN][1000 genomes]
rs61572323	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774326	1.00[ASN][1000 genomes]
rs6807629	1.00[ASN][1000 genomes]
rs72996997	1.00[ASN][1000 genomes]
rs72997000	1.00[ASN][1000 genomes]
rs72998903	1.00[ASN][1000 genomes]
rs73005062	1.00[ASN][1000 genomes]
rs73005096	1.00[ASN][1000 genomes]
rs73009750	0.83[AMR][1000 genomes]
rs73009752	0.83[AMR][1000 genomes]
rs73009769	0.83[AMR][1000 genomes]
rs73011584	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011588	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011589	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011590	0.95[EUR][1000 genomes]
rs73874804	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874808	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874814	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874815	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874816	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874820	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874824	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874835	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv877679	chr3:155128968-155204939	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv437889	chr3:155180174-155185050	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv2760765	chr3:155181380-155182467	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155173800-155182400	Weak transcription	Gastric	stomach
2	chr3:155175000-155183000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:155176000-155183400	Weak transcription	Fetal Intestine Small	intestine
4	chr3:155177600-155186800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:155178400-155198800	Weak transcription	Thymus	Thymus
6	chr3:155178800-155183600	Weak transcription	Fetal Thymus	thymus
7	chr3:155180800-155200200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:155181200-155182800	Weak transcription	Dnd41	blood
9	chr3:155181400-155186200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:155181600-155183000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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