Variant report

Variant	rs72996997
Chromosome Location	chr3:155313676-155313677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10513477	1.00[ASN][1000 genomes]
rs11915298	1.00[ASN][1000 genomes]
rs11922945	1.00[ASN][1000 genomes]
rs16825234	1.00[ASN][1000 genomes]
rs34132051	1.00[ASN][1000 genomes]
rs58162674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59529957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59992845	1.00[ASN][1000 genomes]
rs60135229	1.00[ASN][1000 genomes]
rs60472887	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60670071	1.00[ASN][1000 genomes]
rs60945017	1.00[ASN][1000 genomes]
rs61042393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61572323	1.00[ASN][1000 genomes]
rs6766660	1.00[ASN][1000 genomes]
rs6774326	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807629	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72997000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73005062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73005096	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011584	1.00[ASN][1000 genomes]
rs73011588	1.00[ASN][1000 genomes]
rs73011589	1.00[ASN][1000 genomes]
rs73874804	1.00[ASN][1000 genomes]
rs73874805	1.00[ASN][1000 genomes]
rs73874807	1.00[ASN][1000 genomes]
rs73874814	1.00[ASN][1000 genomes]
rs73874815	1.00[ASN][1000 genomes]
rs73874816	1.00[ASN][1000 genomes]
rs73874820	1.00[ASN][1000 genomes]
rs73874824	1.00[ASN][1000 genomes]
rs73874835	1.00[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155283000-155315000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr3:155289600-155315000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:155290200-155322200	Weak transcription	A549	lung
4	chr3:155303000-155313800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:155303600-155324400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:155304000-155317000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:155304000-155325800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:155308200-155322800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:155310600-155314800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:155311800-155318600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:155311800-155319800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:155311800-155319800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:155311800-155324400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:155312000-155322600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:155312800-155314200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:155313200-155314000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:155313200-155314000	Weak transcription	Fetal Intestine Small	intestine
18	chr3:155313400-155322600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:155313400-155326400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:155313600-155316600	Weak transcription	Stomach Mucosa	stomach

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