Variant report

Variant	rs58162674
Chromosome Location	chr3:155325429-155325430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155316401..155319022-chr3:155323523..155325985,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10513477	1.00[ASN][1000 genomes]
rs11915298	1.00[ASN][1000 genomes]
rs11922945	1.00[ASN][1000 genomes]
rs16825234	1.00[ASN][1000 genomes]
rs34132051	1.00[ASN][1000 genomes]
rs59529957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59992845	1.00[ASN][1000 genomes]
rs60135229	1.00[ASN][1000 genomes]
rs60472887	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60670071	1.00[ASN][1000 genomes]
rs60945017	1.00[ASN][1000 genomes]
rs61042393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61572323	1.00[ASN][1000 genomes]
rs6766660	1.00[ASN][1000 genomes]
rs6774326	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807629	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72996997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72997000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73005062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73005096	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011584	1.00[ASN][1000 genomes]
rs73011588	1.00[ASN][1000 genomes]
rs73011589	1.00[ASN][1000 genomes]
rs73874804	1.00[ASN][1000 genomes]
rs73874805	1.00[ASN][1000 genomes]
rs73874807	1.00[ASN][1000 genomes]
rs73874814	1.00[ASN][1000 genomes]
rs73874815	1.00[ASN][1000 genomes]
rs73874816	1.00[ASN][1000 genomes]
rs73874820	1.00[ASN][1000 genomes]
rs73874824	1.00[ASN][1000 genomes]
rs73874835	1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155304000-155325800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:155313400-155326400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:155321800-155326000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:155322000-155326600	Enhancers	HepG2	liver
5	chr3:155322600-155325800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:155323400-155326000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:155323600-155326000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:155324400-155326200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:155324400-155326800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:155324800-155326200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:155325000-155326000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:155325000-155326200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:155325000-155328200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:155325400-155327000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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