Variant report

Variant	rs61572323
Chromosome Location	chr3:155205690-155205691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10513477	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915298	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922945	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825234	1.00[ASN][1000 genomes]
rs34132051	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55958773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56328238	0.90[EUR][1000 genomes]
rs58162674	1.00[ASN][1000 genomes]
rs58539739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59529957	1.00[ASN][1000 genomes]
rs59992845	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60135229	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60472887	1.00[ASN][1000 genomes]
rs60670071	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60945017	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61042393	1.00[ASN][1000 genomes]
rs6766660	1.00[ASN][1000 genomes]
rs6774326	1.00[ASN][1000 genomes]
rs6807629	1.00[ASN][1000 genomes]
rs72996997	1.00[ASN][1000 genomes]
rs72997000	1.00[ASN][1000 genomes]
rs72998903	1.00[ASN][1000 genomes]
rs73005062	1.00[ASN][1000 genomes]
rs73005096	1.00[ASN][1000 genomes]
rs73009750	0.83[AMR][1000 genomes]
rs73009752	0.83[AMR][1000 genomes]
rs73009769	0.83[AMR][1000 genomes]
rs73011584	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011588	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011589	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011590	0.95[EUR][1000 genomes]
rs73874804	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874805	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874807	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874808	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874814	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874816	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874820	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874824	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874835	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155187200-155216200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:155195000-155230400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:155196200-155231600	Weak transcription	Gastric	stomach
4	chr3:155197000-155218800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:155197800-155216000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:155198400-155209800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:155198400-155230600	Weak transcription	Fetal Intestine Large	intestine
8	chr3:155198800-155221600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr3:155198800-155230800	Weak transcription	Pancreas	Pancrea
10	chr3:155199000-155229800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:155199400-155210800	Weak transcription	Stomach Mucosa	stomach
12	chr3:155199600-155214800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr3:155200600-155230200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr3:155200800-155210200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:155200800-155214600	Weak transcription	Fetal Intestine Small	intestine
16	chr3:155200800-155218000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:155200800-155223600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:155200800-155251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr3:155201000-155209000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr3:155201000-155214600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:155202200-155211800	Weak transcription	Brain Anterior Caudate	brain
22	chr3:155202400-155230000	Weak transcription	A549	lung
23	chr3:155202800-155215800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr3:155203000-155216200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:155203400-155206800	Genic enhancers	Dnd41	blood
26	chr3:155203400-155215600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:155203800-155208400	Weak transcription	Fetal Thymus	thymus
28	chr3:155203800-155211400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:155204000-155209400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr3:155204200-155209600	Weak transcription	Thymus	Thymus
31	chr3:155205000-155216200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr3:155205400-155221800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:155205600-155206200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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