Variant report

Variant	rs73874804
Chromosome Location	chr3:155176560-155176561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10513477	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915298	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922945	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825234	1.00[ASN][1000 genomes]
rs34132051	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55958773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56328238	0.90[EUR][1000 genomes]
rs58162674	1.00[ASN][1000 genomes]
rs58539739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59529957	1.00[ASN][1000 genomes]
rs59992845	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60135229	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60472887	1.00[ASN][1000 genomes]
rs60670071	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60945017	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61042393	1.00[ASN][1000 genomes]
rs61572323	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774326	1.00[ASN][1000 genomes]
rs6807629	1.00[ASN][1000 genomes]
rs72996997	1.00[ASN][1000 genomes]
rs72997000	1.00[ASN][1000 genomes]
rs72998903	1.00[ASN][1000 genomes]
rs73005062	1.00[ASN][1000 genomes]
rs73005096	1.00[ASN][1000 genomes]
rs73009750	0.83[AMR][1000 genomes]
rs73009752	0.83[AMR][1000 genomes]
rs73009769	0.83[AMR][1000 genomes]
rs73011584	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011588	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011589	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73011590	0.95[EUR][1000 genomes]
rs73874805	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874807	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73874814	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874815	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874816	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874820	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874824	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874835	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv877679	chr3:155128968-155204939	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155166800-155178800	Weak transcription	Pancreas	Pancrea
2	chr3:155170000-155179000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:155172400-155179400	Weak transcription	Dnd41	blood
4	chr3:155173800-155182400	Weak transcription	Gastric	stomach
5	chr3:155175000-155183000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:155176000-155183400	Weak transcription	Fetal Intestine Small	intestine

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