Variant report

Variant	rs55968930
Chromosome Location	chr10:96267814-96267815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs56017331	0.88[AFR][1000 genomes]
rs56327671	0.88[AFR][1000 genomes]
rs56352599	0.88[AFR][1000 genomes]
rs58569582	0.88[AFR][1000 genomes]
rs60633128	0.88[AFR][1000 genomes]
rs60928857	0.88[AFR][1000 genomes]
rs7083414	0.88[AFR][1000 genomes]
rs7099346	0.88[AFR][1000 genomes]
rs7100051	0.88[AFR][1000 genomes]
rs7100275	0.88[AFR][1000 genomes]
rs74150812	1.00[AFR][1000 genomes]
rs74150819	1.00[AFR][1000 genomes]
rs74150821	0.88[AFR][1000 genomes]
rs74150824	0.88[AFR][1000 genomes]
rs74150826	0.88[AFR][1000 genomes]
rs74150833	0.88[AFR][1000 genomes]
rs74150834	0.88[AFR][1000 genomes]
rs74150836	0.88[AFR][1000 genomes]
rs74150856	0.88[AFR][1000 genomes]
rs74150857	0.88[AFR][1000 genomes]
rs74150858	0.88[AFR][1000 genomes]
rs74150859	0.88[AFR][1000 genomes]
rs74150861	0.88[AFR][1000 genomes]
rs74150862	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96211600-96292200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:96219800-96283400	Weak transcription	Lung	lung
3	chr10:96223200-96293600	Weak transcription	NHDF-Ad	bronchial
4	chr10:96236400-96268600	Weak transcription	HSMMtube	muscle
5	chr10:96237600-96271400	Weak transcription	Placenta	Placenta
6	chr10:96238200-96273400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:96240200-96271000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:96244000-96282600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:96244400-96283600	Weak transcription	Pancreas	Pancrea
10	chr10:96244400-96304600	Weak transcription	Aorta	Aorta
11	chr10:96248000-96273800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:96249200-96286200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:96249400-96268600	Weak transcription	Colon Smooth Muscle	Colon
14	chr10:96249400-96288600	Weak transcription	Gastric	stomach
15	chr10:96250400-96281000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:96250600-96271400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:96250800-96268600	Weak transcription	Brain Hippocampus Middle	brain
18	chr10:96250800-96281000	Weak transcription	Brain Angular Gyrus	brain
19	chr10:96250800-96294000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:96250800-96297400	Weak transcription	Small Intestine	intestine
21	chr10:96251000-96271600	Weak transcription	Brain Substantia Nigra	brain
22	chr10:96256000-96268600	Weak transcription	Ovary	ovary
23	chr10:96256200-96271400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:96256200-96283600	Weak transcription	Osteobl	bone
25	chr10:96256400-96271400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:96256800-96271000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:96256800-96283800	Weak transcription	Liver	Liver
28	chr10:96257000-96293400	Weak transcription	HepG2	liver
29	chr10:96257200-96271000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:96259800-96271000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:96260600-96269400	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr10:96261000-96304400	Weak transcription	NH-A	brain
33	chr10:96261800-96268600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:96263200-96271000	Weak transcription	Adipose Nuclei	Adipose
35	chr10:96264200-96296800	Weak transcription	Brain Germinal Matrix	brain
36	chr10:96266000-96304600	Weak transcription	Fetal Kidney	kidney
37	chr10:96266400-96268000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:96266400-96269800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr10:96266800-96271800	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr10:96266800-96274400	Strong transcription	HSMM	muscle
41	chr10:96267000-96268200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:96267200-96268000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:96267200-96268800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:96267200-96268800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
45	chr10:96267200-96269800	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:96267400-96268200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:96267400-96268800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
48	chr10:96267400-96268800	ZNF genes & repeats	Fetal Muscle Leg	muscle
49	chr10:96267400-96269200	ZNF genes & repeats	Fetal Stomach	stomach
50	chr10:96267400-96269400	ZNF genes & repeats	Fetal Intestine Small	intestine

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