Variant report

Variant	rs74150858
Chromosome Location	chr10:96379154-96379155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1326833	0.88[AFR][1000 genomes]
rs55781033	0.88[AFR][1000 genomes]
rs55897352	0.88[AFR][1000 genomes]
rs55968930	0.88[AFR][1000 genomes]
rs55983157	0.87[AFR][1000 genomes]
rs56017331	1.00[AFR][1000 genomes]
rs56194519	0.88[AFR][1000 genomes]
rs56327671	1.00[AFR][1000 genomes]
rs56352599	1.00[AFR][1000 genomes]
rs56391651	0.88[AFR][1000 genomes]
rs58569582	1.00[AFR][1000 genomes]
rs60380929	0.84[AFR][1000 genomes]
rs60633128	1.00[AFR][1000 genomes]
rs60928857	1.00[AFR][1000 genomes]
rs7083414	1.00[AFR][1000 genomes]
rs7099346	1.00[AFR][1000 genomes]
rs7100051	1.00[AFR][1000 genomes]
rs7100275	1.00[AFR][1000 genomes]
rs74150812	0.88[AFR][1000 genomes]
rs74150819	0.88[AFR][1000 genomes]
rs74150821	1.00[AFR][1000 genomes]
rs74150823	0.87[AFR][1000 genomes]
rs74150824	1.00[AFR][1000 genomes]
rs74150826	1.00[AFR][1000 genomes]
rs74150833	1.00[AFR][1000 genomes]
rs74150834	1.00[AFR][1000 genomes]
rs74150836	1.00[AFR][1000 genomes]
rs74150856	1.00[AFR][1000 genomes]
rs74150857	1.00[AFR][1000 genomes]
rs74150859	1.00[AFR][1000 genomes]
rs74150861	1.00[AFR][1000 genomes]
rs74150862	1.00[AFR][1000 genomes]
rs74150896	0.88[AFR][1000 genomes]
rs74152306	0.88[AFR][1000 genomes]
rs74152340	0.88[AFR][1000 genomes]
rs74152365	0.88[AFR][1000 genomes]
rs74152367	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv517681	chr10:96343228-96387079	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:96359200-96382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:96370000-96382800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:96370200-96382000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:96370600-96382000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:96370600-96382000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:96372400-96380000	Weak transcription	A549	lung
8	chr10:96372600-96382000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:96372600-96382200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:96372600-96382400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:96372800-96382000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:96373000-96381600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:96373200-96382400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:96373200-96383800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:96374000-96382200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr10:96374600-96382000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:96374600-96386200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:96377400-96382000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:96377600-96379800	Weak transcription	Hela-S3	cervix
20	chr10:96378000-96382000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:96378400-96379200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:96379000-96379200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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