Variant report

Variant	rs58569582
Chromosome Location	chr10:96364585-96364586
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:96364298..96366662-chr10:96373038..96375239,3	K562	blood:
2	chr10:96361276..96363371-chr10:96363793..96366493,2	K562	blood:
3	chr10:96346410..96347997-chr10:96362678..96364645,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1326833	0.88[AFR][1000 genomes]
rs55781033	0.88[AFR][1000 genomes]
rs55897352	0.88[AFR][1000 genomes]
rs55968930	0.88[AFR][1000 genomes]
rs55983157	0.87[AFR][1000 genomes]
rs56017331	1.00[AFR][1000 genomes]
rs56194519	0.88[AFR][1000 genomes]
rs56327671	1.00[AFR][1000 genomes]
rs56352599	1.00[AFR][1000 genomes]
rs56391651	0.88[AFR][1000 genomes]
rs60380929	0.84[AFR][1000 genomes]
rs60633128	1.00[AFR][1000 genomes]
rs60928857	1.00[AFR][1000 genomes]
rs7083414	1.00[AFR][1000 genomes]
rs7099346	1.00[AFR][1000 genomes]
rs7100051	1.00[AFR][1000 genomes]
rs7100275	1.00[AFR][1000 genomes]
rs74150812	0.88[AFR][1000 genomes]
rs74150819	0.88[AFR][1000 genomes]
rs74150821	1.00[AFR][1000 genomes]
rs74150823	0.87[AFR][1000 genomes]
rs74150824	1.00[AFR][1000 genomes]
rs74150826	1.00[AFR][1000 genomes]
rs74150833	1.00[AFR][1000 genomes]
rs74150834	1.00[AFR][1000 genomes]
rs74150836	1.00[AFR][1000 genomes]
rs74150856	1.00[AFR][1000 genomes]
rs74150857	1.00[AFR][1000 genomes]
rs74150858	1.00[AFR][1000 genomes]
rs74150859	1.00[AFR][1000 genomes]
rs74150861	1.00[AFR][1000 genomes]
rs74150862	1.00[AFR][1000 genomes]
rs74150896	0.88[AFR][1000 genomes]
rs74152306	0.88[AFR][1000 genomes]
rs74152340	0.88[AFR][1000 genomes]
rs74152365	0.88[AFR][1000 genomes]
rs74152367	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv517681	chr10:96343228-96387079	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306400-96365600	Weak transcription	Esophagus	oesophagus
2	chr10:96306400-96370400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:96306400-96370600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:96306400-96371000	Weak transcription	Ovary	ovary
5	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:96306800-96373000	Weak transcription	Primary T cells from cord blood	blood
7	chr10:96307000-96375000	Weak transcription	Osteobl	bone
8	chr10:96307200-96371200	Weak transcription	Fetal Brain Male	brain
9	chr10:96307600-96373200	Weak transcription	Brain Germinal Matrix	brain
10	chr10:96307800-96373000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:96308000-96373200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:96309600-96372800	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:96309600-96377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:96312800-96372200	Strong transcription	Dnd41	blood
15	chr10:96314200-96373400	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:96315000-96369200	Weak transcription	Fetal Kidney	kidney
17	chr10:96316000-96371400	Weak transcription	Fetal Brain Female	brain
18	chr10:96316000-96374000	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:96316200-96373000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:96317000-96372600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:96324000-96376600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:96324200-96365600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:96325800-96376000	Weak transcription	NHLF	lung
24	chr10:96331000-96377400	Weak transcription	Placenta	Placenta
25	chr10:96338800-96372000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:96345400-96371200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr10:96345600-96372400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:96346600-96372600	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr10:96347200-96368000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:96348000-96369600	Weak transcription	Fetal Heart	heart
31	chr10:96348200-96364800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:96348600-96371400	Weak transcription	NHEK	skin
33	chr10:96349200-96371000	Weak transcription	Primary B cells from cord blood	blood
34	chr10:96350600-96368000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr10:96350600-96371800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:96351400-96371000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:96354200-96365400	Weak transcription	Gastric	stomach
38	chr10:96354400-96365000	Weak transcription	Fetal Intestine Small	intestine
39	chr10:96354800-96376600	Weak transcription	Fetal Intestine Large	intestine
40	chr10:96355000-96375600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:96355200-96369400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:96356200-96366400	Weak transcription	K562	blood
43	chr10:96357000-96376200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr10:96357800-96369400	Weak transcription	Thymus	Thymus
45	chr10:96357800-96372400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr10:96358200-96371600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr10:96358400-96377200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr10:96359200-96373200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:96359200-96382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr10:96359400-96367200	Weak transcription	Primary monocytes fromperipheralblood	blood

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