Variant report

Variant	rs74150821
Chromosome Location	chr10:96315777-96315778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96303725..96305658-chr10:96314577..96317014,2	MCF-7	breast:
2	chr10:96305172..96306839-chr10:96315388..96317449,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119969	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1326833	0.88[AFR][1000 genomes]
rs55897352	0.88[AFR][1000 genomes]
rs55968930	0.88[AFR][1000 genomes]
rs55983157	0.87[AFR][1000 genomes]
rs56017331	1.00[AFR][1000 genomes]
rs56194519	0.88[AFR][1000 genomes]
rs56327671	1.00[AFR][1000 genomes]
rs56352599	1.00[AFR][1000 genomes]
rs58569582	1.00[AFR][1000 genomes]
rs60380929	0.84[AFR][1000 genomes]
rs60633128	1.00[AFR][1000 genomes]
rs60928857	1.00[AFR][1000 genomes]
rs7083414	1.00[AFR][1000 genomes]
rs7099346	1.00[AFR][1000 genomes]
rs7100051	1.00[AFR][1000 genomes]
rs7100275	1.00[AFR][1000 genomes]
rs74150812	0.88[AFR][1000 genomes]
rs74150819	0.88[AFR][1000 genomes]
rs74150823	0.87[AFR][1000 genomes]
rs74150824	1.00[AFR][1000 genomes]
rs74150826	1.00[AFR][1000 genomes]
rs74150833	1.00[AFR][1000 genomes]
rs74150834	1.00[AFR][1000 genomes]
rs74150836	1.00[AFR][1000 genomes]
rs74150856	1.00[AFR][1000 genomes]
rs74150857	1.00[AFR][1000 genomes]
rs74150858	1.00[AFR][1000 genomes]
rs74150859	1.00[AFR][1000 genomes]
rs74150861	1.00[AFR][1000 genomes]
rs74150862	1.00[AFR][1000 genomes]
rs74150896	0.88[AFR][1000 genomes]
rs74152306	0.88[AFR][1000 genomes]
rs74152340	0.88[AFR][1000 genomes]
rs74152365	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306200-96318600	Weak transcription	Aorta	Aorta
2	chr10:96306400-96321200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:96306400-96325400	Weak transcription	Lung	lung
4	chr10:96306400-96330600	Weak transcription	Placenta	Placenta
5	chr10:96306400-96357200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:96306400-96365600	Weak transcription	Esophagus	oesophagus
7	chr10:96306400-96370400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:96306400-96370600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr10:96306400-96371000	Weak transcription	Ovary	ovary
10	chr10:96306600-96349800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:96306600-96353800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:96306800-96315800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr10:96306800-96317200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr10:96306800-96317200	Weak transcription	Fetal Intestine Large	intestine
16	chr10:96306800-96318600	Weak transcription	HSMM	muscle
17	chr10:96306800-96323000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:96306800-96330400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:96306800-96348000	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr10:96306800-96348200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr10:96306800-96348400	Weak transcription	Primary B cells from cord blood	blood
22	chr10:96306800-96349800	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:96306800-96357200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr10:96306800-96373000	Weak transcription	Primary T cells from cord blood	blood
25	chr10:96307000-96358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:96307000-96375000	Weak transcription	Osteobl	bone
27	chr10:96307200-96315800	Weak transcription	NH-A	brain
28	chr10:96307200-96318600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:96307200-96320000	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr10:96307200-96371200	Weak transcription	Fetal Brain Male	brain
31	chr10:96307600-96316600	Weak transcription	Fetal Lung	lung
32	chr10:96307600-96318800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:96307600-96325400	Weak transcription	NHLF	lung
34	chr10:96307600-96327800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:96307600-96356000	Weak transcription	NHDF-Ad	bronchial
36	chr10:96307600-96373200	Weak transcription	Brain Germinal Matrix	brain
37	chr10:96307800-96315800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:96307800-96348200	Weak transcription	NHEK	skin
39	chr10:96307800-96373000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:96308000-96373200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:96309400-96340800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:96309400-96354000	Weak transcription	K562	blood
43	chr10:96309600-96316600	Weak transcription	HMEC	breast
44	chr10:96309600-96372800	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:96309600-96377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr10:96310200-96339800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr10:96310400-96339800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr10:96310600-96317200	Weak transcription	GM12878-XiMat	blood
49	chr10:96312200-96334400	Strong transcription	A549	lung
50	chr10:96312200-96354000	Weak transcription	Gastric	stomach

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