Variant report

Variant	rs74152306
Chromosome Location	chr10:96434558-96434559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1326833	1.00[AFR][1000 genomes]
rs55781033	1.00[AFR][1000 genomes]
rs55897352	1.00[AFR][1000 genomes]
rs55982893	1.00[AFR][1000 genomes]
rs56017331	0.88[AFR][1000 genomes]
rs56194519	1.00[AFR][1000 genomes]
rs56327671	0.88[AFR][1000 genomes]
rs56352599	0.88[AFR][1000 genomes]
rs56391651	1.00[AFR][1000 genomes]
rs58569582	0.88[AFR][1000 genomes]
rs59537614	0.81[AFR][1000 genomes]
rs60387902	0.87[AFR][1000 genomes]
rs60633128	0.88[AFR][1000 genomes]
rs60928857	0.88[AFR][1000 genomes]
rs7081840	0.87[AFR][1000 genomes]
rs7083414	0.88[AFR][1000 genomes]
rs7099346	0.88[AFR][1000 genomes]
rs7100051	0.88[AFR][1000 genomes]
rs7100275	0.88[AFR][1000 genomes]
rs74150821	0.88[AFR][1000 genomes]
rs74150824	0.88[AFR][1000 genomes]
rs74150826	0.88[AFR][1000 genomes]
rs74150833	0.88[AFR][1000 genomes]
rs74150834	0.88[AFR][1000 genomes]
rs74150836	0.88[AFR][1000 genomes]
rs74150856	0.88[AFR][1000 genomes]
rs74150857	0.88[AFR][1000 genomes]
rs74150858	0.88[AFR][1000 genomes]
rs74150859	0.88[AFR][1000 genomes]
rs74150861	0.88[AFR][1000 genomes]
rs74150862	0.88[AFR][1000 genomes]
rs74150896	1.00[AFR][1000 genomes]
rs74152340	1.00[AFR][1000 genomes]
rs74152361	0.89[AFR][1000 genomes]
rs74152365	1.00[AFR][1000 genomes]
rs74152367	1.00[AFR][1000 genomes]
rs74152372	1.00[AFR][1000 genomes]
rs74152373	1.00[AFR][1000 genomes]
rs74154109	0.88[AFR][1000 genomes]
rs7911920	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv934280	chr10:96401297-96540495	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1040106	chr10:96405296-96514994	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1040976	chr10:96405296-96516804	Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv551954	chr10:96405329-96521249	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv522538	chr10:96405329-96547463	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1049225	chr10:96405502-96516804	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1052478	chr10:96406313-96516804	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1037516	chr10:96407511-96516804	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1047944	chr10:96407825-96563288	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv1050653	chr10:96407825-96634161	Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1049341	chr10:96416809-96471236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv1043604	chr10:96424393-96486504	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96433400-96438200	Enhancers	Stomach Mucosa	stomach
2	chr10:96434000-96436400	Weak transcription	Fetal Intestine Small	intestine
3	chr10:96434400-96435000	Weak transcription	Gastric	stomach

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