Variant report

Variant	rs7099346
Chromosome Location	chr10:96405671-96405672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1326833	0.88[AFR][1000 genomes]
rs55781033	0.88[AFR][1000 genomes]
rs55897352	0.88[AFR][1000 genomes]
rs55968930	0.88[AFR][1000 genomes]
rs55982893	0.88[AFR][1000 genomes]
rs55983157	0.87[AFR][1000 genomes]
rs56017331	1.00[AFR][1000 genomes]
rs56194519	0.88[AFR][1000 genomes]
rs56327671	1.00[AFR][1000 genomes]
rs56352599	1.00[AFR][1000 genomes]
rs56391651	0.88[AFR][1000 genomes]
rs58569582	1.00[AFR][1000 genomes]
rs60380929	0.84[AFR][1000 genomes]
rs60633128	1.00[AFR][1000 genomes]
rs60928857	1.00[AFR][1000 genomes]
rs7083414	1.00[AFR][1000 genomes]
rs7100051	1.00[AFR][1000 genomes]
rs7100275	1.00[AFR][1000 genomes]
rs74150812	0.88[AFR][1000 genomes]
rs74150819	0.88[AFR][1000 genomes]
rs74150821	1.00[AFR][1000 genomes]
rs74150823	0.87[AFR][1000 genomes]
rs74150824	1.00[AFR][1000 genomes]
rs74150826	1.00[AFR][1000 genomes]
rs74150833	1.00[AFR][1000 genomes]
rs74150834	1.00[AFR][1000 genomes]
rs74150836	1.00[AFR][1000 genomes]
rs74150856	1.00[AFR][1000 genomes]
rs74150857	1.00[AFR][1000 genomes]
rs74150858	1.00[AFR][1000 genomes]
rs74150859	1.00[AFR][1000 genomes]
rs74150861	1.00[AFR][1000 genomes]
rs74150862	1.00[AFR][1000 genomes]
rs74150896	0.88[AFR][1000 genomes]
rs74152306	0.88[AFR][1000 genomes]
rs74152340	0.88[AFR][1000 genomes]
rs74152365	0.88[AFR][1000 genomes]
rs74152367	0.88[AFR][1000 genomes]
rs74152372	0.88[AFR][1000 genomes]
rs74152373	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv934280	chr10:96401297-96540495	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1040106	chr10:96405296-96514994	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1040976	chr10:96405296-96516804	Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv551954	chr10:96405329-96521249	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv522538	chr10:96405329-96547463	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1049225	chr10:96405502-96516804	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96400400-96407200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:96404200-96405800	Enhancers	GM12878-XiMat	blood

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