Variant report

Variant	rs55983157
Chromosome Location	chr10:96334036-96334037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96332730..96334428-chr10:96339437..96341073,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs56017331	0.87[AFR][1000 genomes]
rs56327671	0.87[AFR][1000 genomes]
rs56352599	0.87[AFR][1000 genomes]
rs58569582	0.87[AFR][1000 genomes]
rs60633128	0.87[AFR][1000 genomes]
rs60928857	0.87[AFR][1000 genomes]
rs7081840	0.86[AFR][1000 genomes]
rs7083414	0.87[AFR][1000 genomes]
rs7099346	0.87[AFR][1000 genomes]
rs7100051	0.87[AFR][1000 genomes]
rs7100275	0.87[AFR][1000 genomes]
rs74150821	0.87[AFR][1000 genomes]
rs74150823	1.00[AFR][1000 genomes]
rs74150824	0.87[AFR][1000 genomes]
rs74150826	0.87[AFR][1000 genomes]
rs74150833	0.87[AFR][1000 genomes]
rs74150834	0.87[AFR][1000 genomes]
rs74150836	0.87[AFR][1000 genomes]
rs74150856	0.87[AFR][1000 genomes]
rs74150857	0.87[AFR][1000 genomes]
rs74150858	0.87[AFR][1000 genomes]
rs74150859	0.87[AFR][1000 genomes]
rs74150861	0.87[AFR][1000 genomes]
rs74150862	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306400-96357200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:96306400-96365600	Weak transcription	Esophagus	oesophagus
3	chr10:96306400-96370400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:96306400-96370600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:96306400-96371000	Weak transcription	Ovary	ovary
6	chr10:96306600-96349800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:96306600-96353800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:96306800-96348000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr10:96306800-96348200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:96306800-96348400	Weak transcription	Primary B cells from cord blood	blood
12	chr10:96306800-96349800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:96306800-96357200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr10:96306800-96373000	Weak transcription	Primary T cells from cord blood	blood
15	chr10:96307000-96358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:96307000-96375000	Weak transcription	Osteobl	bone
17	chr10:96307200-96371200	Weak transcription	Fetal Brain Male	brain
18	chr10:96307600-96356000	Weak transcription	NHDF-Ad	bronchial
19	chr10:96307600-96373200	Weak transcription	Brain Germinal Matrix	brain
20	chr10:96307800-96348200	Weak transcription	NHEK	skin
21	chr10:96307800-96373000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:96308000-96373200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:96309400-96340800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:96309400-96354000	Weak transcription	K562	blood
25	chr10:96309600-96372800	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr10:96309600-96377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr10:96310200-96339800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:96310400-96339800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:96312200-96334400	Strong transcription	A549	lung
30	chr10:96312200-96354000	Weak transcription	Gastric	stomach
31	chr10:96312800-96372200	Strong transcription	Dnd41	blood
32	chr10:96314200-96339800	Strong transcription	Fetal Thymus	thymus
33	chr10:96314200-96373400	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr10:96315000-96369200	Weak transcription	Fetal Kidney	kidney
35	chr10:96315600-96343800	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr10:96315600-96345200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:96316000-96338200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:96316000-96371400	Weak transcription	Fetal Brain Female	brain
39	chr10:96316000-96374000	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr10:96316200-96357600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr10:96316200-96373000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr10:96317000-96372600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:96317400-96348000	Weak transcription	NH-A	brain
44	chr10:96321000-96353200	Weak transcription	Fetal Intestine Large	intestine
45	chr10:96322600-96336200	Strong transcription	H9 Cell Line	embryonic stem cell
46	chr10:96323400-96340400	Weak transcription	HepG2	liver
47	chr10:96324000-96356600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr10:96324000-96376600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr10:96324200-96338400	Weak transcription	Thymus	Thymus
50	chr10:96324200-96353800	Weak transcription	Primary B cells from peripheral blood	blood

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