Variant report

Variant	rs55990545
Chromosome Location	chr10:93223657-93223658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs56868758	0.85[AFR][1000 genomes]
rs58350586	1.00[AFR][1000 genomes]
rs60167819	1.00[AFR][1000 genomes]
rs60231237	0.85[AFR][1000 genomes]
rs60715495	0.81[AFR][1000 genomes]
rs61606120	1.00[AFR][1000 genomes]
rs74149207	1.00[AFR][1000 genomes]
rs74149209	1.00[AFR][1000 genomes]
rs74149211	1.00[AFR][1000 genomes]
rs74149213	1.00[AFR][1000 genomes]
rs74149215	1.00[AFR][1000 genomes]
rs74149218	1.00[AFR][1000 genomes]
rs74149221	1.00[AFR][1000 genomes]
rs74149236	1.00[AFR][1000 genomes]
rs74149237	1.00[AFR][1000 genomes]
rs74149242	0.85[AFR][1000 genomes]
rs74149243	0.85[AFR][1000 genomes]
rs74150668	0.93[AFR][1000 genomes]
rs74150671	1.00[AFR][1000 genomes]
rs74150672	1.00[AFR][1000 genomes]
rs74150675	0.84[AFR][1000 genomes]
rs74150676	1.00[AFR][1000 genomes]
rs74150677	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93184400-93226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:93186000-93226800	Weak transcription	Pancreas	Pancrea
3	chr10:93213200-93224200	Weak transcription	Aorta	Aorta
4	chr10:93213400-93224000	Weak transcription	Psoas Muscle	Psoas
5	chr10:93214200-93272000	Weak transcription	HUVEC	blood vessel
6	chr10:93216800-93224000	Weak transcription	Brain Anterior Caudate	brain
7	chr10:93217200-93224000	Weak transcription	K562	blood
8	chr10:93217400-93224000	Weak transcription	Fetal Brain Female	brain
9	chr10:93218000-93224200	Weak transcription	Left Ventricle	heart
10	chr10:93218000-93230600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:93218200-93224200	Weak transcription	Esophagus	oesophagus
12	chr10:93218600-93228200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:93218800-93224000	Weak transcription	NH-A	brain
14	chr10:93219600-93224200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr10:93219600-93247600	Weak transcription	HSMMtube	muscle
16	chr10:93219800-93224200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:93219800-93224200	Strong transcription	Adipose Nuclei	Adipose
18	chr10:93220000-93224200	Weak transcription	Fetal Intestine Small	intestine
19	chr10:93220200-93224000	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:93220200-93224800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:93220200-93225000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:93220200-93225000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:93220200-93226200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:93220200-93226800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr10:93220400-93223800	Weak transcription	Ovary	ovary
26	chr10:93220400-93224200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:93220600-93223800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:93220600-93226600	Weak transcription	NHLF	lung
29	chr10:93220600-93226800	Weak transcription	A549	lung
30	chr10:93220600-93271400	Weak transcription	HMEC	breast
31	chr10:93220800-93223800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:93220800-93223800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:93220800-93229200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:93220800-93248200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:93220800-93259400	Weak transcription	Primary T cells from cord blood	blood
36	chr10:93221000-93223800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr10:93221000-93226600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr10:93221000-93228800	Weak transcription	Primary B cells from cord blood	blood
39	chr10:93221600-93224400	Weak transcription	Fetal Stomach	stomach
40	chr10:93221800-93223800	Strong transcription	Hela-S3	cervix
41	chr10:93221800-93224400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr10:93221800-93224800	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:93221800-93225000	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr10:93221800-93225200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:93221800-93225400	Strong transcription	HSMM	muscle
46	chr10:93221800-93226600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:93222000-93225200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr10:93222200-93224000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr10:93222200-93224200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr10:93222200-93224200	Strong transcription	Colon Smooth Muscle	Colon

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