Variant report
| Variant | rs74150676 |
|---|---|
| Chromosome Location | chr10:93153565-93153566 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:93151407..93155536-chr10:93168446..93171574,3 | K562 | blood: | |
| 2 | chr10:93153179..93157130-chr10:93167181..93171260,4 | MCF-7 | breast: | |
| 3 | chr10:93149987..93152148-chr10:93152604..93155572,2 | K562 | blood: | |
| 4 | chr10:93151407..93154863-chr10:93168446..93171574,3 | K562 | blood: | |
| 5 | chr10:93152974..93155260-chr10:93163531..93165879,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000165338 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs55990545 | 1.00[AFR][1000 genomes] |
| rs56868758 | 0.85[AFR][1000 genomes] |
| rs58350586 | 1.00[AFR][1000 genomes] |
| rs60167819 | 1.00[AFR][1000 genomes] |
| rs60231237 | 0.85[AFR][1000 genomes] |
| rs60715495 | 0.81[AFR][1000 genomes] |
| rs61606120 | 1.00[AFR][1000 genomes] |
| rs74149207 | 1.00[AFR][1000 genomes] |
| rs74149209 | 1.00[AFR][1000 genomes] |
| rs74149211 | 1.00[AFR][1000 genomes] |
| rs74149213 | 1.00[AFR][1000 genomes] |
| rs74149215 | 1.00[AFR][1000 genomes] |
| rs74149218 | 1.00[AFR][1000 genomes] |
| rs74149221 | 1.00[AFR][1000 genomes] |
| rs74149236 | 1.00[AFR][1000 genomes] |
| rs74149237 | 1.00[AFR][1000 genomes] |
| rs74149242 | 0.85[AFR][1000 genomes] |
| rs74149243 | 0.85[AFR][1000 genomes] |
| rs74150668 | 0.93[AFR][1000 genomes] |
| rs74150671 | 1.00[AFR][1000 genomes] |
| rs74150672 | 1.00[AFR][1000 genomes] |
| rs74150675 | 0.84[AFR][1000 genomes] |
| rs74150677 | 0.93[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:93150000-93156800 | Weak transcription | Primary T helper naive cells from peripheral blood | blood |
