Variant report

Variant	rs61606120
Chromosome Location	chr10:93196231-93196232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93169438..93171176-chr10:93195078..93197545,2	MCF-7	breast:
2	chr10:93168446..93170163-chr10:93194954..93197166,2	K562	blood:
3	chr10:93190689..93192359-chr10:93195947..93197865,2	K562	blood:

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55990545	1.00[AFR][1000 genomes]
rs56868758	0.85[AFR][1000 genomes]
rs58350586	1.00[AFR][1000 genomes]
rs60167819	1.00[AFR][1000 genomes]
rs60231237	0.85[AFR][1000 genomes]
rs60715495	0.81[AFR][1000 genomes]
rs74149207	1.00[AFR][1000 genomes]
rs74149209	1.00[AFR][1000 genomes]
rs74149211	1.00[AFR][1000 genomes]
rs74149213	1.00[AFR][1000 genomes]
rs74149215	1.00[AFR][1000 genomes]
rs74149218	1.00[AFR][1000 genomes]
rs74149221	1.00[AFR][1000 genomes]
rs74149236	1.00[AFR][1000 genomes]
rs74149237	1.00[AFR][1000 genomes]
rs74149242	0.85[AFR][1000 genomes]
rs74149243	0.85[AFR][1000 genomes]
rs74150668	0.93[AFR][1000 genomes]
rs74150671	1.00[AFR][1000 genomes]
rs74150672	1.00[AFR][1000 genomes]
rs74150675	0.84[AFR][1000 genomes]
rs74150676	1.00[AFR][1000 genomes]
rs74150677	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv895888	chr10:93176418-93206699	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv895889	chr10:93176418-93207971	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895890	chr10:93176418-93219246	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93170800-93204600	Weak transcription	Gastric	stomach
2	chr10:93171800-93203200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:93174600-93198000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:93175000-93204200	Weak transcription	Fetal Brain Male	brain
5	chr10:93175000-93205400	Weak transcription	Aorta	Aorta
6	chr10:93175000-93208800	Weak transcription	Adipose Nuclei	Adipose
7	chr10:93176600-93204000	Weak transcription	Brain Anterior Caudate	brain
8	chr10:93176600-93205400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:93176600-93212600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:93176800-93196800	Weak transcription	Brain Angular Gyrus	brain
11	chr10:93176800-93199800	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:93176800-93203600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:93180800-93203200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr10:93181200-93197000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr10:93182200-93207200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:93184000-93203800	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:93184000-93205000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:93184400-93226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:93185000-93208800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:93186000-93226800	Weak transcription	Pancreas	Pancrea
21	chr10:93186600-93196800	Weak transcription	Dnd41	blood
22	chr10:93186600-93197800	Weak transcription	Fetal Brain Female	brain
23	chr10:93186600-93205600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:93190400-93203400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:93190600-93198600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:93190600-93204200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr10:93190800-93197000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:93191200-93198600	Weak transcription	Fetal Thymus	thymus
29	chr10:93191800-93197800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr10:93192000-93198200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:93192000-93206600	Weak transcription	Primary B cells from cord blood	blood
32	chr10:93192800-93198800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr10:93192800-93203200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr10:93193400-93199200	Weak transcription	Lung	lung
35	chr10:93193400-93205000	Weak transcription	Fetal Stomach	stomach
36	chr10:93193600-93198000	Weak transcription	Fetal Intestine Small	intestine
37	chr10:93193600-93204600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr10:93193600-93205600	Weak transcription	Liver	Liver
39	chr10:93193800-93196400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr10:93193800-93196800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr10:93193800-93197800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr10:93193800-93204800	Weak transcription	Right Ventricle	heart
43	chr10:93194000-93201800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr10:93194400-93196400	Weak transcription	NHEK	skin
45	chr10:93194400-93197000	Weak transcription	HMEC	breast
46	chr10:93194400-93197800	Weak transcription	Osteobl	bone
47	chr10:93194400-93203200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr10:93194400-93204600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:93194400-93204600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr10:93194400-93205600	Weak transcription	NH-A	brain

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