Variant report

Variant	rs58350586
Chromosome Location	chr10:93167495-93167496
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93158520..93160600-chr10:93166963..93169198,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55990545	1.00[AFR][1000 genomes]
rs56868758	0.85[AFR][1000 genomes]
rs60167819	1.00[AFR][1000 genomes]
rs60231237	0.85[AFR][1000 genomes]
rs60715495	0.81[AFR][1000 genomes]
rs61606120	1.00[AFR][1000 genomes]
rs74149207	1.00[AFR][1000 genomes]
rs74149209	1.00[AFR][1000 genomes]
rs74149211	1.00[AFR][1000 genomes]
rs74149213	1.00[AFR][1000 genomes]
rs74149215	1.00[AFR][1000 genomes]
rs74149218	1.00[AFR][1000 genomes]
rs74149221	1.00[AFR][1000 genomes]
rs74149236	1.00[AFR][1000 genomes]
rs74149237	1.00[AFR][1000 genomes]
rs74149242	0.85[AFR][1000 genomes]
rs74149243	0.85[AFR][1000 genomes]
rs74150668	0.93[AFR][1000 genomes]
rs74150671	1.00[AFR][1000 genomes]
rs74150672	1.00[AFR][1000 genomes]
rs74150675	0.84[AFR][1000 genomes]
rs74150676	1.00[AFR][1000 genomes]
rs74150677	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93162400-93168800	Weak transcription	HSMM	muscle
2	chr10:93162800-93169000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:93163000-93167600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:93163000-93168400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:93163000-93168800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:93163600-93168400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:93164800-93167600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:93165600-93167600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:93166200-93167600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:93166200-93168600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:93166200-93168600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:93166400-93168800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr10:93166600-93167600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:93166600-93167600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:93166600-93167600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:93166600-93168000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr10:93167400-93168200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:93167400-93168600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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