Variant report

Variant	rs60167819
Chromosome Location	chr10:93211208-93211209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55990545	1.00[AFR][1000 genomes]
rs56868758	0.85[AFR][1000 genomes]
rs58350586	1.00[AFR][1000 genomes]
rs60231237	0.85[AFR][1000 genomes]
rs60715495	0.81[AFR][1000 genomes]
rs61606120	1.00[AFR][1000 genomes]
rs74149207	1.00[AFR][1000 genomes]
rs74149209	1.00[AFR][1000 genomes]
rs74149211	1.00[AFR][1000 genomes]
rs74149213	1.00[AFR][1000 genomes]
rs74149215	1.00[AFR][1000 genomes]
rs74149218	1.00[AFR][1000 genomes]
rs74149221	1.00[AFR][1000 genomes]
rs74149236	1.00[AFR][1000 genomes]
rs74149237	1.00[AFR][1000 genomes]
rs74149242	0.85[AFR][1000 genomes]
rs74149243	0.85[AFR][1000 genomes]
rs74150668	0.93[AFR][1000 genomes]
rs74150671	1.00[AFR][1000 genomes]
rs74150672	1.00[AFR][1000 genomes]
rs74150675	0.84[AFR][1000 genomes]
rs74150676	1.00[AFR][1000 genomes]
rs74150677	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv895890	chr10:93176418-93219246	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv33149	chr10:93203538-93211658	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93176600-93212600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:93184400-93226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:93186000-93226800	Weak transcription	Pancreas	Pancrea
4	chr10:93194600-93213800	Weak transcription	HUVEC	blood vessel
5	chr10:93195600-93213000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:93196000-93220600	Weak transcription	Hela-S3	cervix
7	chr10:93205000-93211800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:93209400-93211800	Weak transcription	Psoas Muscle	Psoas
9	chr10:93210800-93214200	ZNF genes & repeats	Fetal Lung	lung
10	chr10:93210800-93214400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:93211200-93213000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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