Variant report

Variant	rs56008123
Chromosome Location	chr7:98668664-98668665
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98647538..98649949-chr7:98668075..98669658,2	MCF-7	breast:
2	chr7:98666324..98669111-chr7:98738998..98741505,2	MCF-7	breast:
3	chr7:98667554..98669412-chr7:98906723..98909530,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs35614868	0.83[AMR][1000 genomes]
rs56140509	1.00[AMR][1000 genomes]
rs6975658	1.00[AMR][1000 genomes]
rs73709536	1.00[AMR][1000 genomes]
rs7783504	0.83[AMR][1000 genomes]
rs7800815	1.00[AMR][1000 genomes]
rs7804376	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98638600-98676000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98649200-98670000	Weak transcription	Stomach Mucosa	stomach
3	chr7:98650200-98681000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:98650400-98676600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:98653000-98690800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr7:98653600-98676600	Weak transcription	Spleen	Spleen
7	chr7:98653800-98674000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr7:98654000-98676400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:98654000-98676600	Weak transcription	NHLF	lung
10	chr7:98654800-98669400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:98654800-98690200	Weak transcription	Fetal Kidney	kidney
12	chr7:98655000-98669000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:98655000-98676600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:98655000-98676800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr7:98655200-98670000	Weak transcription	NH-A	brain
16	chr7:98655200-98670200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:98655200-98674000	Weak transcription	Primary T cells from cord blood	blood
18	chr7:98655200-98674400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:98655200-98675800	Weak transcription	Fetal Brain Female	brain
20	chr7:98655200-98676200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr7:98655200-98676600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr7:98655200-98676600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:98655200-98676600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr7:98655200-98676600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr7:98655200-98676600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr7:98655200-98676600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr7:98655200-98676600	Weak transcription	Thymus	Thymus
28	chr7:98655200-98676600	Weak transcription	A549	lung
29	chr7:98655200-98676600	Weak transcription	HSMM	muscle
30	chr7:98655200-98681000	Weak transcription	Hela-S3	cervix
31	chr7:98656400-98674000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr7:98656400-98676800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr7:98656400-98685400	Weak transcription	HSMMtube	muscle
34	chr7:98656600-98670000	Weak transcription	Osteobl	bone
35	chr7:98656600-98676600	Weak transcription	HMEC	breast
36	chr7:98656600-98676800	Weak transcription	Fetal Lung	lung
37	chr7:98656600-98683400	Weak transcription	Fetal Intestine Large	intestine
38	chr7:98657800-98674200	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr7:98657800-98681000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr7:98658400-98676200	Weak transcription	Fetal Intestine Small	intestine
41	chr7:98658400-98676600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr7:98658400-98676800	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr7:98658800-98669800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr7:98658800-98684200	Weak transcription	Dnd41	blood
45	chr7:98659000-98673600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr7:98659200-98684000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr7:98659400-98674000	Weak transcription	Primary B cells from cord blood	blood
48	chr7:98659600-98676200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr7:98659800-98674000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr7:98664000-98669400	Weak transcription	Fetal Stomach	stomach

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