Variant report

Variant	rs7800815
Chromosome Location	chr7:98665517-98665518
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98665283..98667310-chr7:98810047..98812572,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12112617	1.00[EUR][1000 genomes]
rs12112986	1.00[EUR][1000 genomes]
rs12113003	1.00[EUR][1000 genomes]
rs12113535	1.00[EUR][1000 genomes]
rs12113540	1.00[EUR][1000 genomes]
rs35614868	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4729513	1.00[EUR][1000 genomes]
rs56008123	1.00[AMR][1000 genomes]
rs56140509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6975658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399283	1.00[EUR][1000 genomes]
rs73709536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73709550	1.00[EUR][1000 genomes]
rs7783504	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7804376	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98638600-98676000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98649200-98670000	Weak transcription	Stomach Mucosa	stomach
3	chr7:98650000-98666600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:98650200-98681000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:98650400-98676600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:98651600-98668000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:98652400-98667200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:98652400-98667800	Weak transcription	Brain Angular Gyrus	brain
9	chr7:98653000-98690800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr7:98653600-98665600	Weak transcription	Aorta	Aorta
11	chr7:98653600-98676600	Weak transcription	Spleen	Spleen
12	chr7:98653800-98674000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr7:98654000-98676400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:98654000-98676600	Weak transcription	NHLF	lung
15	chr7:98654800-98669400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:98654800-98690200	Weak transcription	Fetal Kidney	kidney
17	chr7:98655000-98666200	Weak transcription	Brain Hippocampus Middle	brain
18	chr7:98655000-98669000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:98655000-98676600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr7:98655000-98676800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr7:98655200-98665800	Weak transcription	Esophagus	oesophagus
22	chr7:98655200-98666400	Weak transcription	Brain Substantia Nigra	brain
23	chr7:98655200-98666600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr7:98655200-98667400	Weak transcription	Colon Smooth Muscle	Colon
25	chr7:98655200-98667800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr7:98655200-98667800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:98655200-98670000	Weak transcription	NH-A	brain
28	chr7:98655200-98670200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr7:98655200-98674000	Weak transcription	Primary T cells from cord blood	blood
30	chr7:98655200-98674400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:98655200-98675800	Weak transcription	Fetal Brain Female	brain
32	chr7:98655200-98676200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:98655200-98676600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr7:98655200-98676600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:98655200-98676600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr7:98655200-98676600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr7:98655200-98676600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr7:98655200-98676600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr7:98655200-98676600	Weak transcription	Thymus	Thymus
40	chr7:98655200-98676600	Weak transcription	A549	lung
41	chr7:98655200-98676600	Weak transcription	HSMM	muscle
42	chr7:98655200-98681000	Weak transcription	Hela-S3	cervix
43	chr7:98656200-98666400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr7:98656400-98666200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:98656400-98668000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr7:98656400-98674000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr7:98656400-98676800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr7:98656400-98685400	Weak transcription	HSMMtube	muscle
49	chr7:98656600-98665600	Weak transcription	Liver	Liver
50	chr7:98656600-98665600	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links