Variant report

Variant	rs6975658
Chromosome Location	chr7:98686318-98686319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98676065..98678383-chr7:98685350..98688262,2	MCF-7	breast:
2	chr7:98685362..98687722-chr7:98738938..98740939,2	K562	blood:
3	chr7:98684880..98687411-chr7:98688003..98689513,2	K562	blood:
4	chr7:98685529..98691307-chr7:98694168..98698506,8	K562	blood:
5	chr7:98684659..98687777-chr7:98739439..98743102,6	K562	blood:

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12112617	1.00[EUR][1000 genomes]
rs12112986	1.00[EUR][1000 genomes]
rs12113003	1.00[EUR][1000 genomes]
rs12113535	1.00[EUR][1000 genomes]
rs12113540	1.00[EUR][1000 genomes]
rs35614868	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4729513	1.00[EUR][1000 genomes]
rs56008123	1.00[AMR][1000 genomes]
rs56140509	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399283	1.00[EUR][1000 genomes]
rs73709536	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73709550	1.00[EUR][1000 genomes]
rs7783504	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7800815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7804376	0.83[YRI][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98653000-98690800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr7:98654800-98690200	Weak transcription	Fetal Kidney	kidney
3	chr7:98676600-98702200	Weak transcription	Brain Germinal Matrix	brain
4	chr7:98677000-98687600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:98677000-98687600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:98677000-98689000	Weak transcription	Gastric	stomach
7	chr7:98677000-98690000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:98677000-98693400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:98677000-98693400	Weak transcription	Aorta	Aorta
10	chr7:98677000-98693600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr7:98677000-98694800	Weak transcription	Fetal Intestine Small	intestine
12	chr7:98677000-98696200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:98677000-98696200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr7:98677000-98700000	Weak transcription	HSMM	muscle
15	chr7:98677200-98687400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr7:98677200-98688600	Weak transcription	Placenta	Placenta
17	chr7:98677200-98688600	Weak transcription	NHEK	skin
18	chr7:98677200-98688800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr7:98677200-98689400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr7:98677200-98690200	Weak transcription	Lung	lung
21	chr7:98677200-98692000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:98677200-98693400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr7:98677200-98705400	Weak transcription	Fetal Thymus	thymus
24	chr7:98677600-98693400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:98677600-98693600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:98678800-98687200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr7:98678800-98687800	Weak transcription	Spleen	Spleen
28	chr7:98678800-98689400	Weak transcription	Right Atrium	heart
29	chr7:98678800-98693400	Weak transcription	Left Ventricle	heart
30	chr7:98678800-98700000	Weak transcription	HUVEC	blood vessel
31	chr7:98679000-98687800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:98679000-98693400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr7:98679200-98689000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr7:98681400-98688000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr7:98681600-98688400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:98681600-98688400	Weak transcription	Colon Smooth Muscle	Colon
37	chr7:98681600-98693200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:98681600-98693800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr7:98681800-98687600	Weak transcription	Esophagus	oesophagus
40	chr7:98681800-98688000	Weak transcription	Stomach Mucosa	stomach
41	chr7:98681800-98688400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr7:98681800-98688800	Weak transcription	Fetal Stomach	stomach
43	chr7:98681800-98689000	Weak transcription	NHLF	lung
44	chr7:98681800-98690000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr7:98681800-98691800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:98681800-98693200	Weak transcription	Osteobl	bone
47	chr7:98681800-98693400	Weak transcription	HMEC	breast
48	chr7:98681800-98693800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr7:98681800-98700600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr7:98682000-98688200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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