Variant report

Variant	rs35614868
Chromosome Location	chr7:98582569-98582570
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98580262..98584541-chr7:98585411..98588140,4	K562	blood:
2	chr7:98582532..98585302-chr7:98585411..98588242,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12112617	1.00[EUR][1000 genomes]
rs12112986	1.00[EUR][1000 genomes]
rs12113003	1.00[EUR][1000 genomes]
rs12113535	1.00[EUR][1000 genomes]
rs12113540	1.00[EUR][1000 genomes]
rs4729513	1.00[EUR][1000 genomes]
rs56008123	0.83[AMR][1000 genomes]
rs56140509	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6975658	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399283	1.00[EUR][1000 genomes]
rs73709536	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73709550	1.00[EUR][1000 genomes]
rs7783504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7800815	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7804376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1847495	chr7:98556216-98648069	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98477800-98599600	Weak transcription	Right Atrium	heart
2	chr7:98478000-98618600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:98478200-98583200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:98478200-98606000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:98478600-98583200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:98478600-98583400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:98478600-98613800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:98478600-98614400	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr7:98478600-98614800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr7:98478800-98583000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:98478800-98583800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:98478800-98613600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr7:98478800-98614200	Strong transcription	Placenta	Placenta
14	chr7:98479000-98586200	Strong transcription	Fetal Thymus	thymus
15	chr7:98479400-98583600	Strong transcription	Primary T cells from cord blood	blood
16	chr7:98482400-98613600	Strong transcription	Dnd41	blood
17	chr7:98485000-98615400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:98486200-98596400	Strong transcription	Fetal Intestine Large	intestine
19	chr7:98487200-98603000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:98488000-98594200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:98492800-98583600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr7:98493800-98594600	Strong transcription	Fetal Muscle Trunk	muscle
23	chr7:98505800-98583400	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:98505800-98594400	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:98506000-98583200	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr7:98512600-98583600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr7:98512800-98583600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr7:98512800-98586600	Strong transcription	Thymus	Thymus
29	chr7:98512800-98594800	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr7:98513200-98583400	Strong transcription	Primary B cells from cord blood	blood
31	chr7:98520800-98598400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr7:98521400-98594200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:98522000-98614200	Strong transcription	Liver	Liver
34	chr7:98523400-98583400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr7:98528600-98583600	Strong transcription	Primary hematopoietic stem cells	blood
36	chr7:98529200-98586400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr7:98529400-98614800	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr7:98529600-98614400	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr7:98529600-98614600	Strong transcription	Primary B cells from peripheral blood	blood
40	chr7:98530000-98594200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr7:98530400-98591000	Strong transcription	Fetal Brain Female	brain
42	chr7:98531000-98583400	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr7:98531000-98613600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr7:98531000-98613600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr7:98537200-98583400	Strong transcription	Fetal Stomach	stomach
46	chr7:98537800-98594200	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr7:98538600-98583400	Strong transcription	Fetal Muscle Leg	muscle
48	chr7:98542000-98594200	Strong transcription	Stomach Smooth Muscle	stomach
49	chr7:98542200-98594200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:98542800-98618400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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