Variant report

Variant	rs73399283
Chromosome Location	chr7:98725782-98725783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:98718971..98721801-chr7:98724719..98728203,3	MCF-7	breast:
2	chr7:98725090..98727435-chr7:98727471..98729765,3	K562	blood:
3	chr7:98725403..98728760-chr7:98738937..98743366,4	MCF-7	breast:
4	chr7:98725270..98727490-chr7:98735625..98737953,2	K562	blood:
5	chr7:98709918..98712208-chr7:98725685..98727548,2	K562	blood:
6	chr7:98725464..98728251-chr7:98738859..98741076,3	K562	blood:
7	chr7:98718671..98728659-chr7:98733886..98742869,16	K562	blood:
8	chr7:98715570..98717243-chr7:98723901..98726967,3	K562	blood:
9	chr7:98724706..98726826-chr7:98727471..98729640,2	K562	blood:
10	chr7:98658561..98660206-chr7:98724640..98727497,2	K562	blood:
11	chr7:98725085..98728334-chr7:98729871..98732024,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12112617	1.00[EUR][1000 genomes]
rs12112986	1.00[EUR][1000 genomes]
rs12113003	1.00[EUR][1000 genomes]
rs12113535	1.00[EUR][1000 genomes]
rs12113540	1.00[EUR][1000 genomes]
rs12705026	0.87[AFR][1000 genomes]
rs17161680	1.00[EUR][1000 genomes]
rs35614868	1.00[EUR][1000 genomes]
rs4729513	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56140509	1.00[EUR][1000 genomes]
rs6975658	1.00[EUR][1000 genomes]
rs73709536	1.00[EUR][1000 genomes]
rs73709550	1.00[EUR][1000 genomes]
rs7783504	1.00[EUR][1000 genomes]
rs7800815	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv2755119	chr7:98721885-98800145	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98707200-98739400	Weak transcription	Thymus	Thymus
2	chr7:98710000-98739200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr7:98710400-98730400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr7:98714400-98730600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr7:98714800-98739400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr7:98717000-98731000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr7:98718200-98726200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:98718200-98728600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:98718200-98736400	Weak transcription	Dnd41	blood
10	chr7:98718800-98734800	Weak transcription	Fetal Brain Female	brain
11	chr7:98719400-98726000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:98719800-98729600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr7:98720400-98726400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr7:98721000-98725800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:98721200-98726400	Enhancers	Brain Anterior Caudate	brain
16	chr7:98721800-98731200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr7:98721800-98735000	Weak transcription	HSMMtube	muscle
18	chr7:98721800-98735400	Enhancers	Stomach Mucosa	stomach
19	chr7:98722000-98739600	Weak transcription	Primary B cells from cord blood	blood
20	chr7:98722200-98725800	Weak transcription	Fetal Muscle Leg	muscle
21	chr7:98722200-98726000	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:98722200-98729400	Weak transcription	Left Ventricle	heart
23	chr7:98722200-98731400	Weak transcription	Primary T cells from cord blood	blood
24	chr7:98722200-98738600	Weak transcription	Fetal Intestine Small	intestine
25	chr7:98722400-98725800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr7:98722400-98733000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr7:98722400-98739400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:98722600-98725800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr7:98722600-98726000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr7:98722600-98730800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:98722600-98734800	Weak transcription	Fetal Heart	heart
32	chr7:98723000-98725800	Weak transcription	HMEC	breast
33	chr7:98723000-98726000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr7:98723400-98728800	Weak transcription	Colonic Mucosa	Colon
35	chr7:98723400-98729800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr7:98723400-98735800	Weak transcription	Hela-S3	cervix
37	chr7:98723600-98726400	Weak transcription	Fetal Intestine Large	intestine
38	chr7:98723600-98728400	Weak transcription	Esophagus	oesophagus
39	chr7:98723600-98728400	Weak transcription	Spleen	Spleen
40	chr7:98723600-98728600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr7:98723600-98729800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr7:98723600-98735000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr7:98723600-98738600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:98723800-98725800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr7:98723800-98738600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr7:98724200-98726400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr7:98724200-98727000	Enhancers	Brain Angular Gyrus	brain
48	chr7:98724200-98727400	Enhancers	A549	lung
49	chr7:98724400-98725800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr7:98724400-98725800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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