Variant report

Variant	rs73709536
Chromosome Location	chr7:98672154-98672155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12112617	1.00[EUR][1000 genomes]
rs12112986	1.00[EUR][1000 genomes]
rs12113003	1.00[EUR][1000 genomes]
rs12113535	1.00[EUR][1000 genomes]
rs12113540	1.00[EUR][1000 genomes]
rs35614868	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4729513	1.00[EUR][1000 genomes]
rs56008123	1.00[AMR][1000 genomes]
rs56140509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6975658	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399283	1.00[EUR][1000 genomes]
rs73709550	1.00[EUR][1000 genomes]
rs7783504	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7800815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7804376	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98638600-98676000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98650200-98681000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr7:98650400-98676600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:98653000-98690800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr7:98653600-98676600	Weak transcription	Spleen	Spleen
6	chr7:98653800-98674000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:98654000-98676400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:98654000-98676600	Weak transcription	NHLF	lung
9	chr7:98654800-98690200	Weak transcription	Fetal Kidney	kidney
10	chr7:98655000-98676600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr7:98655000-98676800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr7:98655200-98674000	Weak transcription	Primary T cells from cord blood	blood
13	chr7:98655200-98674400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:98655200-98675800	Weak transcription	Fetal Brain Female	brain
15	chr7:98655200-98676200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:98655200-98676600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:98655200-98676600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:98655200-98676600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr7:98655200-98676600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr7:98655200-98676600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr7:98655200-98676600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr7:98655200-98676600	Weak transcription	Thymus	Thymus
23	chr7:98655200-98676600	Weak transcription	A549	lung
24	chr7:98655200-98676600	Weak transcription	HSMM	muscle
25	chr7:98655200-98681000	Weak transcription	Hela-S3	cervix
26	chr7:98656400-98674000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr7:98656400-98676800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr7:98656400-98685400	Weak transcription	HSMMtube	muscle
29	chr7:98656600-98676600	Weak transcription	HMEC	breast
30	chr7:98656600-98676800	Weak transcription	Fetal Lung	lung
31	chr7:98656600-98683400	Weak transcription	Fetal Intestine Large	intestine
32	chr7:98657800-98674200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr7:98657800-98681000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr7:98658400-98676200	Weak transcription	Fetal Intestine Small	intestine
35	chr7:98658400-98676600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr7:98658400-98676800	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr7:98658800-98684200	Weak transcription	Dnd41	blood
38	chr7:98659000-98673600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr7:98659200-98684000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:98659400-98674000	Weak transcription	Primary B cells from cord blood	blood
41	chr7:98659600-98676200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr7:98659800-98674000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr7:98665600-98676600	Weak transcription	Right Atrium	heart
44	chr7:98666000-98676400	Weak transcription	Aorta	Aorta
45	chr7:98666200-98673800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr7:98666200-98676200	Weak transcription	Esophagus	oesophagus
47	chr7:98666600-98672800	Weak transcription	Right Ventricle	heart
48	chr7:98667000-98676200	Weak transcription	Brain Anterior Caudate	brain
49	chr7:98667200-98672800	Weak transcription	Left Ventricle	heart
50	chr7:98668200-98673600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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