Variant report

Variant	rs73709550
Chromosome Location	chr7:98709624-98709625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98708110..98711722-chr7:98740191..98742294,3	MCF-7	breast:
2	chr7:98705746..98709744-chr7:98739368..98742285,3	MCF-7	breast:
3	chr7:98707445..98709185-chr7:98709231..98712215,2	K562	blood:
4	chr7:98709239..98711562-chr7:98720636..98722362,2	K562	blood:
5	chr7:98702619..98704754-chr7:98708950..98710841,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12112617	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12112986	1.00[EUR][1000 genomes]
rs12113003	1.00[EUR][1000 genomes]
rs12113535	1.00[EUR][1000 genomes]
rs12113540	1.00[EUR][1000 genomes]
rs35614868	1.00[EUR][1000 genomes]
rs4729513	1.00[EUR][1000 genomes]
rs56140509	1.00[EUR][1000 genomes]
rs6975658	1.00[EUR][1000 genomes]
rs73399283	1.00[EUR][1000 genomes]
rs73709536	1.00[EUR][1000 genomes]
rs7783504	1.00[EUR][1000 genomes]
rs7800815	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98697400-98717600	Weak transcription	Dnd41	blood
2	chr7:98702600-98710200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:98703200-98710200	Enhancers	HMEC	breast
4	chr7:98703400-98711200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:98703800-98711000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:98704400-98710200	Enhancers	Brain Hippocampus Middle	brain
7	chr7:98704600-98710200	Enhancers	Brain Angular Gyrus	brain
8	chr7:98704600-98710400	Enhancers	NHEK	skin
9	chr7:98705000-98710400	Enhancers	HSMM	muscle
10	chr7:98705200-98711000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr7:98705400-98710200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr7:98705800-98709800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:98705800-98711600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:98705800-98719400	Weak transcription	Fetal Kidney	kidney
15	chr7:98706000-98710000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:98706400-98710400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr7:98706600-98710600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr7:98706800-98710400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr7:98707200-98709800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr7:98707200-98710200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:98707200-98710200	Enhancers	Brain Anterior Caudate	brain
22	chr7:98707200-98710200	Enhancers	Brain Substantia Nigra	brain
23	chr7:98707200-98710400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:98707200-98710400	Enhancers	NHLF	lung
25	chr7:98707200-98710400	Enhancers	Osteobl	bone
26	chr7:98707200-98712000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr7:98707200-98713000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:98707200-98717000	Weak transcription	Fetal Stomach	stomach
29	chr7:98707200-98717200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr7:98707200-98717600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:98707200-98717600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:98707200-98739400	Weak transcription	Thymus	Thymus
33	chr7:98707400-98714400	Weak transcription	Fetal Muscle Leg	muscle
34	chr7:98707400-98717200	Weak transcription	Lung	lung
35	chr7:98707400-98717600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:98707600-98710800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:98707600-98713600	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr7:98707600-98715400	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr7:98707800-98710200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:98707800-98710400	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr7:98707800-98710400	Enhancers	HepG2	liver
42	chr7:98708000-98710200	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr7:98708000-98710200	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr7:98708000-98710400	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr7:98708000-98711000	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr7:98708200-98710000	Enhancers	Brain Cingulate Gyrus	brain
47	chr7:98708200-98710200	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr7:98708200-98711200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr7:98708400-98709800	Enhancers	A549	lung
50	chr7:98708400-98710000	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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