Variant report

Variant	rs56017242
Chromosome Location	chr6:15086558-15086559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000112186	Chromatin interaction
ENSG00000271888	Chromatin interaction
ENSG00000008083	Chromatin interaction
ENSG00000235488	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12523847	0.84[AMR][1000 genomes]
rs12526581	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12527338	0.84[AMR][1000 genomes]
rs13208436	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34002727	0.84[AMR][1000 genomes]
rs34020582	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34916409	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34975423	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35107556	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35592284	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35653219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35724957	0.80[AMR][1000 genomes]
rs35734059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56065492	0.84[AMR][1000 genomes]
rs6908624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916449	0.84[AMR][1000 genomes]
rs6935097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71551018	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15077000-15090000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:15078400-15086600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:15078400-15086800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:15078800-15087400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:15080000-15089400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:15080200-15086600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:15080400-15086800	Weak transcription	Right Atrium	heart
8	chr6:15082000-15086800	Weak transcription	Stomach Mucosa	stomach
9	chr6:15082200-15086600	Weak transcription	Fetal Intestine Small	intestine
10	chr6:15083200-15086800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:15083800-15088200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr6:15083800-15093000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr6:15084000-15086800	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:15085400-15086600	Weak transcription	Fetal Intestine Large	intestine
15	chr6:15085400-15086800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:15085400-15087200	Weak transcription	Placenta	Placenta
17	chr6:15086200-15087000	Enhancers	Primary hematopoietic stem cells	blood
18	chr6:15086200-15087400	Enhancers	Primary B cells from cord blood	blood
19	chr6:15086400-15088200	Transcr. at gene 5' and 3'	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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