Variant report

Variant	rs12523847
Chromosome Location	chr6:15117568-15117569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12526581	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12527338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13208436	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34002727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34020582	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34916409	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs34975423	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs35107556	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs35592284	0.84[AMR][1000 genomes]
rs35653219	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs35724957	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35734059	0.84[AMR][1000 genomes]
rs4715961	1.00[AFR][1000 genomes]
rs4715962	1.00[AFR][1000 genomes]
rs56017242	0.84[AMR][1000 genomes]
rs56065492	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6459391	1.00[CEU][hapmap]
rs6908624	0.93[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes]
rs6912122	1.00[CEU][hapmap]
rs6912486	1.00[CEU][hapmap];0.80[MKK][hapmap]
rs6916449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6935097	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6937953	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs71551017	1.00[AFR][1000 genomes]
rs71551018	1.00[AFR][1000 genomes]
rs7751222	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15087400-15117600	Weak transcription	Right Atrium	heart
2	chr6:15116400-15132000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15117200-15117600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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