Variant report

Variant	rs4715961
Chromosome Location	chr6:15067667-15067668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15064020..15068777-chr6:15085229..15093631,19	MCF-7	breast:
2	chr6:15063509..15068597-chr6:15242568..15250230,12	MCF-7	breast:
3	chr6:15065231..15078374-chr6:15243362..15252213,26	MCF-7	breast:
4	chr6:14730821..14734594-chr6:15065015..15067705,5	MCF-7	breast:
5	chr6:15066128..15068160-chr6:15211246..15212780,2	K562	blood:
6	chr6:14741983..14744344-chr6:15066073..15067702,2	MCF-7	breast:
7	chr6:14737129..14739512-chr6:15065575..15068395,2	MCF-7	breast:
8	chr6:15063403..15067702-chr6:15220647..15223786,6	MCF-7	breast:
9	chr6:15065449..15068780-chr6:15072645..15074662,4	K562	blood:
10	chr6:15062744..15064596-chr6:15064785..15067869,4	K562	blood:
11	chr6:14887758..14891402-chr6:15064654..15067912,3	MCF-7	breast:
12	chr6:15065304..15068160-chr6:15210203..15212780,2	K562	blood:
13	chr6:15034583..15040875-chr6:15061503..15068528,12	MCF-7	breast:
14	chr6:15066460..15068940-chr6:15259945..15262215,2	MCF-7	breast:
15	chr6:15065797..15068754-chr6:15078887..15080835,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000235488	Chromatin interaction
ENSG00000271888	Chromatin interaction
ENSG00000008083	Chromatin interaction
ENSG00000234261	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12523847	1.00[AFR][1000 genomes]
rs12526581	1.00[AFR][1000 genomes]
rs12527338	1.00[AFR][1000 genomes]
rs13208436	1.00[AFR][1000 genomes]
rs34020582	1.00[AFR][1000 genomes]
rs34916409	1.00[AFR][1000 genomes]
rs34975423	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35107556	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs35592284	0.80[EUR][1000 genomes]
rs35653219	1.00[AFR][1000 genomes]
rs35724957	1.00[AFR][1000 genomes]
rs4715962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55999893	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6459389	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6459390	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6459391	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66584091	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66681462	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6908351	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6912122	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6912486	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6916449	1.00[AFR][1000 genomes]
rs6935097	1.00[AFR][1000 genomes]
rs6937953	1.00[AFR][1000 genomes]
rs6939427	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71551017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71551018	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7750902	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7751222	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883454	chr6:15009137-15081252	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15043800-15077400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:15058200-15074400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15061200-15069800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:15065200-15067800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:15065200-15068600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:15065400-15067800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:15065600-15067800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:15065600-15067800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:15065600-15067800	Enhancers	HMEC	breast
10	chr6:15066000-15067800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:15066800-15067800	Enhancers	Placenta	Placenta
12	chr6:15067000-15067800	Enhancers	Spleen	Spleen
13	chr6:15067200-15076600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:15067400-15067800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:15067400-15067800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr6:15067400-15067800	Enhancers	NHEK	skin
17	chr6:15067400-15068600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:15067400-15073200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:15067400-15076600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:15067600-15067800	Active TSS	Adipose Nuclei	Adipose
21	chr6:15067600-15067800	Enhancers	K562	blood
22	chr6:15067600-15068000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:15067600-15068800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:15067600-15068800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:15067600-15072600	Weak transcription	Stomach Mucosa	stomach
26	chr6:15067600-15076200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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