Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15064020..15068777-chr6:15085229..15093631,19	MCF-7	breast:
2	chr6:15063509..15068597-chr6:15242568..15250230,12	MCF-7	breast:
3	chr6:15065231..15078374-chr6:15243362..15252213,26	MCF-7	breast:
4	chr6:14737129..14739512-chr6:15065575..15068395,2	MCF-7	breast:
5	chr6:15065449..15068780-chr6:15072645..15074662,4	K562	blood:
6	chr6:15034583..15040875-chr6:15061503..15068528,12	MCF-7	breast:
7	chr6:15066460..15068940-chr6:15259945..15262215,2	MCF-7	breast:
8	chr6:15065797..15068754-chr6:15078887..15080835,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12523847	1.00[AFR][1000 genomes]
rs12526581	1.00[AFR][1000 genomes]
rs12527338	1.00[AFR][1000 genomes]
rs13208436	1.00[AFR][1000 genomes]
rs34020582	1.00[AFR][1000 genomes]
rs34916409	1.00[AFR][1000 genomes]
rs34975423	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35107556	1.00[AFR][1000 genomes]
rs35653219	1.00[AFR][1000 genomes]
rs35724957	1.00[AFR][1000 genomes]
rs4715961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55999893	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6459389	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6459390	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6459391	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66584091	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66681462	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6908351	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6912122	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6912486	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6916449	1.00[AFR][1000 genomes]
rs6935097	1.00[AFR][1000 genomes]
rs6937953	1.00[AFR][1000 genomes]
rs6939427	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71551017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71551018	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7750902	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7751222	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883454	chr6:15009137-15081252	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15043800-15077400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:15058200-15074400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15061200-15069800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:15065200-15068600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:15067200-15076600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:15067400-15068600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:15067400-15073200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:15067400-15076600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:15067600-15068800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:15067600-15068800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:15067600-15072600	Weak transcription	Stomach Mucosa	stomach
12	chr6:15067600-15076200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:15067800-15069200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:15067800-15071600	Weak transcription	K562	blood
15	chr6:15067800-15073200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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