Variant report

Variant	rs6935097
Chromosome Location	chr6:15088098-15088099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15085986..15094450-chr6:15243173..15249347,32	MCF-7	breast:
2	chr6:15060990..15063217-chr6:15088088..15090210,2	MCF-7	breast:
3	chr6:15087697..15090095-chr6:15243505..15246959,6	K562	blood:
4	chr6:15086720..15088244-chr6:15243922..15246794,2	MCF-7	breast:
5	chr6:15087697..15092455-chr6:15243972..15249952,11	K562	blood:
6	chr6:14725985..14728380-chr6:15088035..15090181,2	K562	blood:
7	chr6:15086585..15088349-chr6:15089074..15091649,2	MCF-7	breast:
8	chr6:15086616..15088953-chr6:15137602..15139748,2	K562	blood:
9	chr6:15087836..15090279-chr6:15247303..15249952,4	K562	blood:
10	chr6:15088011..15090050-chr6:15218799..15221115,2	MCF-7	breast:
11	chr6:15086004..15088226-chr6:17393882..17396155,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000235488	Chromatin interaction
ENSG00000008083	Chromatin interaction
ENSG00000234261	Chromatin interaction
ENSG00000271888	Chromatin interaction
ENSG00000112186	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12523847	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12526581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12527338	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13208436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34002727	0.84[AMR][1000 genomes]
rs34020582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34916409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34975423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35107556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35592284	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35653219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35724957	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs35734059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4715961	1.00[AFR][1000 genomes]
rs4715962	1.00[AFR][1000 genomes]
rs56017242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56065492	0.84[AMR][1000 genomes]
rs6459391	1.00[CEU][hapmap]
rs6908624	1.00[CEU][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6912122	1.00[CEU][hapmap]
rs6912486	1.00[CEU][hapmap];0.81[MKK][hapmap]
rs6916449	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6937953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71551017	1.00[AFR][1000 genomes]
rs71551018	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7751222	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15077000-15090000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:15080000-15089400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15083800-15088200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:15083800-15093000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:15086400-15088200	Transcr. at gene 5' and 3'	K562	blood
6	chr6:15086600-15088200	Enhancers	Duodenum Mucosa	Duodenum
7	chr6:15086800-15088200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr6:15087200-15091600	Enhancers	Placenta	Placenta
9	chr6:15087400-15090000	Weak transcription	Primary B cells from cord blood	blood
10	chr6:15087400-15117600	Weak transcription	Right Atrium	heart
11	chr6:15087600-15089000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:15087600-15090200	Weak transcription	Fetal Thymus	thymus
13	chr6:15087800-15089000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:15087800-15089000	Weak transcription	Fetal Kidney	kidney
15	chr6:15087800-15089400	Weak transcription	Stomach Mucosa	stomach
16	chr6:15087800-15090000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:15087800-15090000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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