Variant report

Variant	rs71551018
Chromosome Location	chr6:15078561-15078562
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15078226..15082089-chr6:15082411..15086924,5	K562	blood:
2	chr6:15076508..15078945-chr6:15079653..15081556,2	K562	blood:
3	chr6:15062917..15066512-chr6:15075789..15079596,4	K562	blood:
4	chr6:15069299..15075541-chr6:15075577..15080851,9	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12523847	1.00[AFR][1000 genomes]
rs12526581	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12527338	1.00[AFR][1000 genomes]
rs13208436	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34020582	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34916409	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34975423	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35107556	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35592284	0.88[EUR][1000 genomes]
rs35653219	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35724957	1.00[AFR][1000 genomes]
rs35734059	0.84[EUR][1000 genomes]
rs4715961	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4715962	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55999893	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56017242	0.84[EUR][1000 genomes]
rs6459389	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6459390	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6459391	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66584091	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66681462	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6908351	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6908624	0.84[EUR][1000 genomes]
rs6912122	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6912486	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6916449	1.00[AFR][1000 genomes]
rs6935097	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6937953	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6939427	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71551017	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7750902	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7751222	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883454	chr6:15009137-15081252	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15073800-15079600	Weak transcription	Stomach Mucosa	stomach
2	chr6:15074800-15080000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:15076200-15079000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:15076200-15079000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:15076200-15080200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:15076400-15079800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:15076400-15080600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr6:15076600-15079000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:15076600-15079600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:15076600-15079800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:15076600-15080200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:15076600-15080200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:15076600-15080200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:15076800-15079600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr6:15076800-15079800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:15076800-15079800	Weak transcription	Right Atrium	heart
17	chr6:15077000-15090000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:15077200-15079000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:15077400-15079400	Enhancers	Fetal Thymus	thymus
20	chr6:15077400-15079600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:15077400-15079800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:15077400-15080200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:15077600-15078600	Enhancers	Primary T cells from cord blood	blood
24	chr6:15077600-15080200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:15077800-15079000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:15078000-15078600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:15078000-15078600	Enhancers	Thymus	Thymus
28	chr6:15078200-15078600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:15078200-15078600	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr6:15078200-15078600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:15078200-15078800	Enhancers	Primary hematopoietic stem cells	blood
32	chr6:15078400-15079400	Enhancers	K562	blood
33	chr6:15078400-15079600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:15078400-15080400	Enhancers	Fetal Intestine Small	intestine
35	chr6:15078400-15086600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:15078400-15086800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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