Variant report

Variant	rs66681462
Chromosome Location	chr6:15073508-15073509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15062551..15066335-chr6:15072410..15076511,4	MCF-7	breast:
2	chr6:15072178..15075145-chr6:15244379..15247154,3	K562	blood:
3	chr6:15071613..15074171-chr6:15076318..15078190,2	K562	blood:
4	chr6:15065231..15078374-chr6:15243362..15252213,26	MCF-7	breast:
5	chr6:15070915..15075463-chr6:15246209..15249841,5	MCF-7	breast:
6	chr6:15065449..15068780-chr6:15072645..15074662,4	K562	blood:
7	chr6:15070190..15074230-chr6:15074491..15076843,3	MCF-7	breast:
8	chr6:15069314..15074049-chr6:15088016..15092585,9	MCF-7	breast:
9	chr6:15069299..15075541-chr6:15075577..15080851,9	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction
ENSG00000234261	Chromatin interaction
ENSG00000008083	Chromatin interaction
ENSG00000235488	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs34975423	0.83[EUR][1000 genomes]
rs35107556	0.81[EUR][1000 genomes]
rs35592284	0.81[EUR][1000 genomes]
rs4715961	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4715962	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55999893	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6459389	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6459390	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6459391	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66584091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6908351	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6912122	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6912486	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6939427	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71551017	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71551018	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7750902	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7751222	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883454	chr6:15009137-15081252	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15043800-15077400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:15058200-15074400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15067200-15076600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:15067400-15076600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:15067600-15076200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:15068600-15073600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:15068800-15077200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:15069200-15076400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:15072600-15073800	Enhancers	Stomach Mucosa	stomach
10	chr6:15072600-15075600	Weak transcription	K562	blood
11	chr6:15073000-15074400	Enhancers	GM12878-XiMat	blood
12	chr6:15073200-15074000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:15073200-15074200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:15073200-15074400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:15073200-15075600	Enhancers	Brain Cingulate Gyrus	brain
16	chr6:15073400-15073800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:15073400-15074200	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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