Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:15016833..15018489-chr6:15081774..15084228,2	K562	blood:
2	chr6:15079900..15085737-chr6:15087961..15092346,8	MCF-7	breast:
3	chr6:15074695..15078360-chr6:15082005..15084184,3	MCF-7	breast:
4	chr6:15078226..15082089-chr6:15082411..15086924,5	K562	blood:
5	chr6:15074593..15076383-chr6:15083206..15084995,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234261	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12523847	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12526581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12527338	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13208436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34002727	0.84[AMR][1000 genomes]
rs34020582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34975423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35107556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35592284	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35653219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35724957	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs35734059	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4715961	1.00[AFR][1000 genomes]
rs4715962	1.00[AFR][1000 genomes]
rs56017242	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56065492	0.84[AMR][1000 genomes]
rs6908624	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6916449	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6935097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6937953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71551017	1.00[AFR][1000 genomes]
rs71551018	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15077000-15090000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:15078400-15086600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:15078400-15086800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:15078600-15083800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:15078800-15087400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:15080000-15089400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:15080200-15083800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:15080200-15086600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:15080400-15086800	Weak transcription	Right Atrium	heart
10	chr6:15082000-15086800	Weak transcription	Stomach Mucosa	stomach
11	chr6:15082200-15086600	Weak transcription	Fetal Intestine Small	intestine
12	chr6:15083200-15083800	Weak transcription	K562	blood
13	chr6:15083200-15084200	Weak transcription	Fetal Intestine Large	intestine
14	chr6:15083200-15086800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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