Variant report

Variant	rs56092341
Chromosome Location	chr6:110534626-110534627
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:73103273..73105609-chr6:110532483..110534690,2	MCF-7	breast:
2	chr6:110532696..110534924-chr6:110589578..110591934,2	K562	blood:
3	chr6:110530388..110533347-chr6:110533679..110536950,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11751592	0.91[EUR][1000 genomes]
rs11752726	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11753953	0.82[EUR][1000 genomes]
rs11756044	0.81[EUR][1000 genomes]
rs11756892	0.88[EUR][1000 genomes]
rs11757333	0.82[EUR][1000 genomes]
rs11759874	0.82[EUR][1000 genomes]
rs12111403	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17071246	0.82[EUR][1000 genomes]
rs2361499	0.82[EUR][1000 genomes]
rs34164264	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35265701	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4413651	0.82[EUR][1000 genomes]
rs55638850	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55725048	0.91[EUR][1000 genomes]
rs55748081	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55817927	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55913032	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55953493	0.82[EUR][1000 genomes]
rs55960151	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56209747	0.91[EUR][1000 genomes]
rs56409005	0.86[AFR][1000 genomes]
rs56806615	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61562056	0.82[EUR][1000 genomes]
rs6908582	0.82[EUR][1000 genomes]
rs6931749	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6932203	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72934064	0.85[AFR][1000 genomes]
rs73533808	0.82[EUR][1000 genomes]
rs73765680	0.88[EUR][1000 genomes]
rs7750037	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7753237	0.82[EUR][1000 genomes]
rs7763743	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv1792799	chr6:110411065-110566597	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	esv1801843	chr6:110506109-110566328	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110502600-110536600	Weak transcription	Esophagus	oesophagus
2	chr6:110503400-110536600	Weak transcription	Gastric	stomach
3	chr6:110504400-110536600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:110504600-110536600	Weak transcription	Fetal Stomach	stomach
5	chr6:110504800-110536600	Weak transcription	Pancreas	Pancrea
6	chr6:110504800-110536600	Weak transcription	Spleen	Spleen
7	chr6:110507400-110536600	Weak transcription	Thymus	Thymus
8	chr6:110512200-110536600	Weak transcription	Lung	lung
9	chr6:110512200-110538200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:110512200-110551000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:110512200-110552200	Weak transcription	Right Ventricle	heart
12	chr6:110513400-110538600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:110519800-110543200	Weak transcription	Fetal Intestine Small	intestine
14	chr6:110522200-110538000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:110522400-110553200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr6:110523000-110536600	Weak transcription	Fetal Heart	heart
17	chr6:110527600-110551400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:110528000-110552800	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr6:110528200-110557400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr6:110528600-110541200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:110528600-110541800	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:110528600-110542600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:110528600-110544200	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:110528600-110544400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:110528600-110551400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:110528800-110534800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr6:110528800-110535000	Strong transcription	Osteobl	bone
28	chr6:110528800-110538200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:110528800-110544800	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr6:110528800-110551400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:110528800-110551400	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:110528800-110551400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:110528800-110551600	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:110528800-110551600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:110528800-110552200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:110529000-110535800	Strong transcription	HSMM	muscle
37	chr6:110529000-110541800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:110529000-110542400	Strong transcription	Fetal Lung	lung
39	chr6:110529000-110544200	Strong transcription	Dnd41	blood
40	chr6:110529000-110544400	Strong transcription	Liver	Liver
41	chr6:110529000-110551400	Strong transcription	Primary B cells from cord blood	blood
42	chr6:110529400-110536800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr6:110529400-110551400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:110529800-110535400	Weak transcription	Brain Angular Gyrus	brain
45	chr6:110529800-110536600	Weak transcription	Aorta	Aorta
46	chr6:110530000-110556400	Weak transcription	Small Intestine	intestine
47	chr6:110530600-110551600	Strong transcription	Fetal Thymus	thymus
48	chr6:110530800-110536000	Strong transcription	NHLF	lung
49	chr6:110530800-110558400	Weak transcription	Stomach Mucosa	stomach
50	chr6:110531000-110536200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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