Variant report

Variant	rs11757333
Chromosome Location	chr6:110374919-110374920
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:110026295..110027102-chr6:110374620..110375475,7	K562	blood:
2	chr6:110025993..110027032-chr6:110374302..110375553,10	MCF-7	breast:
3	chr6:110374615..110375444-chr6:110711951..110712525,3	MCF-7	breast:
4	chr6:110026083..110027087-chr6:110374560..110375697,12	MCF-7	breast:
5	chr6:110369283..110371139-chr6:110374130..110376200,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11751592	0.86[EUR][1000 genomes]
rs11752273	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752726	0.82[EUR][1000 genomes]
rs11753953	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756044	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759874	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111403	0.86[EUR][1000 genomes]
rs17071246	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005493	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2361499	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34164264	0.86[EUR][1000 genomes]
rs35265701	0.84[EUR][1000 genomes]
rs4413651	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55638850	0.91[EUR][1000 genomes]
rs55725048	0.86[EUR][1000 genomes]
rs55748081	0.86[EUR][1000 genomes]
rs55817927	0.86[EUR][1000 genomes]
rs55913032	0.86[EUR][1000 genomes]
rs55953493	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55960151	0.86[EUR][1000 genomes]
rs56092341	0.82[EUR][1000 genomes]
rs56209747	0.86[EUR][1000 genomes]
rs56806615	0.86[EUR][1000 genomes]
rs61562056	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908582	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932203	0.82[EUR][1000 genomes]
rs73533808	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750037	0.86[EUR][1000 genomes]
rs7751796	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753237	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763743	0.82[EUR][1000 genomes]
rs7772041	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs879134	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110373000-110375400	Enhancers	Placenta	Placenta
2	chr6:110374200-110375000	Enhancers	Fetal Muscle Trunk	muscle
3	chr6:110374400-110375000	Enhancers	Brain Cingulate Gyrus	brain
4	chr6:110374400-110375000	Enhancers	Ovary	ovary
5	chr6:110374600-110375000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:110374600-110375000	Enhancers	Brain Angular Gyrus	brain
7	chr6:110374600-110375000	Active TSS	Brain Hippocampus Middle	brain
8	chr6:110374600-110375000	Enhancers	Brain Substantia Nigra	brain
9	chr6:110374800-110375000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:110374800-110375000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:110374800-110375000	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:110374800-110375000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:110374800-110375000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr6:110374800-110375000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr6:110374800-110375000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:110374800-110375000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:110374800-110375000	Enhancers	Brain Anterior Caudate	brain
18	chr6:110374800-110375000	Enhancers	Esophagus	oesophagus
19	chr6:110374800-110375000	Flanking Active TSS	Stomach Mucosa	stomach
20	chr6:110374800-110375000	Enhancers	Stomach Smooth Muscle	stomach
21	chr6:110374800-110375000	Bivalent Enhancer	HUVEC	blood vessel
22	chr6:110374800-110375200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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