Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11752273	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753953	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755481	0.80[AMR][1000 genomes]
rs11755985	0.80[AMR][1000 genomes]
rs11756044	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757333	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759874	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17071246	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005493	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2361499	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4413651	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55953493	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56131993	0.80[AMR][1000 genomes]
rs61562056	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908582	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934012	0.80[AMR][1000 genomes]
rs73533808	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751796	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753237	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772041	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019690	chr6:110102601-110360778	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110345400-110361200	Weak transcription	Right Atrium	heart
2	chr6:110353000-110360600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:110354600-110361000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:110356200-110360400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:110356200-110360600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:110358800-110359600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:110358800-110359600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:110359200-110359400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:110359200-110359400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:110359200-110359400	Enhancers	Adipose Nuclei	Adipose
11	chr6:110359200-110359400	Enhancers	NHDF-Ad	bronchial
12	chr6:110359200-110359600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:110359200-110360400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:110359200-110360600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:110359200-110360800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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