Variant report

Variant	rs2005493
Chromosome Location	chr6:110360390-110360391
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:110025954..110027208-chr6:110359665..110362381,41	MCF-7	breast:
2	chr6:110026058..110027053-chr6:110360200..110361829,12	MCF-7	breast:
3	chr6:110024804..110028000-chr6:110359372..110362087,3	MCF-7	breast:
4	chr6:110213330..110215841-chr6:110359990..110362077,2	MCF-7	breast:
5	chr6:109847880..109849128-chr6:110360138..110361223,5	K562	blood:
6	chr6:110026208..110027002-chr6:110360378..110361549,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11752273	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753953	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756044	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757333	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759874	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17071246	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2361499	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4413651	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55953493	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61562056	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908582	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73533808	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751796	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753237	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772041	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs879134	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019690	chr6:110102601-110360778	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110345400-110361200	Weak transcription	Right Atrium	heart
2	chr6:110353000-110360600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:110354600-110361000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:110356200-110360400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:110356200-110360600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:110359200-110360400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:110359200-110360600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:110359200-110360800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:110359400-110360600	Weak transcription	Adipose Nuclei	Adipose
10	chr6:110359400-110360600	Weak transcription	NHDF-Ad	bronchial
11	chr6:110359400-110360800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:110359400-110361000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:110359400-110361000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr6:110359600-110360600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:110359600-110360600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:110359600-110360600	Enhancers	HepG2	liver
17	chr6:110359600-110361000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:110359600-110361000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:110359600-110361000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:110359800-110360800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:110359800-110360800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:110360200-110360600	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr6:110360200-110360800	Enhancers	Primary B cells from peripheral blood	blood
24	chr6:110360200-110360800	Enhancers	Primary T cells fromperipheralblood	blood

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