Variant report

Variant	rs11759874
Chromosome Location	chr6:110378664-110378665
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11751592	0.86[EUR][1000 genomes]
rs11752273	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752726	1.00[GIH][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs11753953	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756044	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757333	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111403	1.00[GIH][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs17071246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17071335	0.81[GIH][hapmap]
rs17071340	0.81[GIH][hapmap]
rs2005493	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2334320	0.81[GIH][hapmap]
rs2361499	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34164264	0.86[EUR][1000 genomes]
rs35265701	0.84[EUR][1000 genomes]
rs4413651	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55638850	0.91[EUR][1000 genomes]
rs55725048	0.86[EUR][1000 genomes]
rs55748081	0.86[EUR][1000 genomes]
rs55817927	0.86[EUR][1000 genomes]
rs55913032	0.86[EUR][1000 genomes]
rs55953493	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55960151	0.86[EUR][1000 genomes]
rs56092341	0.82[EUR][1000 genomes]
rs56209747	0.86[EUR][1000 genomes]
rs56806615	0.86[EUR][1000 genomes]
rs61562056	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908582	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931749	1.00[GIH][hapmap];0.80[MEX][hapmap]
rs6932203	0.82[EUR][1000 genomes]
rs73533808	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750037	1.00[GIH][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs7751796	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753237	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763743	0.82[EUR][1000 genomes]
rs7772041	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs879134	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11759874	POMC	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110375000-110380800	Weak transcription	Ovary	ovary
2	chr6:110376400-110384600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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