Variant report

Variant	rs6908582
Chromosome Location	chr6:110373309-110373310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:110026617..110027143-chr6:110372925..110373520,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11751592	0.86[EUR][1000 genomes]
rs11752273	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752726	0.82[EUR][1000 genomes]
rs11753953	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756044	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757333	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759874	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111403	0.86[EUR][1000 genomes]
rs17071246	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005493	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2361499	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34164264	0.86[EUR][1000 genomes]
rs35265701	0.84[EUR][1000 genomes]
rs4413651	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55638850	0.91[EUR][1000 genomes]
rs55725048	0.86[EUR][1000 genomes]
rs55748081	0.86[EUR][1000 genomes]
rs55817927	0.86[EUR][1000 genomes]
rs55913032	0.86[EUR][1000 genomes]
rs55953493	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55960151	0.86[EUR][1000 genomes]
rs56092341	0.82[EUR][1000 genomes]
rs56209747	0.86[EUR][1000 genomes]
rs56806615	0.86[EUR][1000 genomes]
rs61562056	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932203	0.82[EUR][1000 genomes]
rs73533808	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750037	0.86[EUR][1000 genomes]
rs7751796	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753237	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763743	0.82[EUR][1000 genomes]
rs7772041	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs879134	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110371600-110374600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:110372400-110373800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:110373000-110375400	Enhancers	Placenta	Placenta

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